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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORUFI11G01380.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 380aa MW: 41445 Da PI: 6.5158 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORUFI11G01380.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 366.4 | 4.1e-112 | 23 | 373 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94
+lLl+cAe v++++l +a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ l +ps+++ + + +++aa+++f+ +sP++kfs
ORUFI11G01380.1 23 LTLLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLpNPSPAAARLHGRVAAAFQVFNGISPFVKFS 116
579************************************************************777777777799999**************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
h+taNqaI ea+e+eer GlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+rL++fA++lg+pfef + va++ +
ORUFI11G01380.1 117 HFTANQAIQEAFEREER----------GLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGN 195
***************86..........****************************....***************************.7****** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
l++e+L v ++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er
ORUFI11G01380.1 196 LDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPER 282
******************99..999999999999....**********************.899****************************** PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF+ +l +aa+qa lll +++sdgy++ ee+g+l lgWkd L+++SaWr
ORUFI11G01380.1 283 HVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRVSSLAGSAAAQAVLLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 373
**********************999987.**************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MAGTATREEQ RRKQRDEEGL HLLTLLLQCA ESVNADNLDE AHRALLEIAE LATPFGTSTQ 60
RVAAYFAEAM SARLVSSCLG LYAPLPNPSP AAARLHGRVA AAFQVFNGIS PFVKFSHFTA 120
NQAIQEAFER EERGLQWPGL FHILASRPGG PPRVRLTGLG ASMEALEATG KRLSDFADTL 180
GLPFEFCPVA DKAGNLDPEK LGVTRREAVA VHWLRHSLYD VTGSDSNTLW LIQRLAPKVV 240
TMVEQDLSHS GSFLARFVEA IHYYSALFDS LDASYSEDSP ERHVVEQQLL SREIRNVLAV 300
GGPARTGDVK FGSWREKLAQ SGFRVSSLAG SAAAQAVLLL GMFPSDGYTL IEENGALKLG 360
WKDLCLLTAS AWRPIQASGR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK073467 | 0.0 | AK073467.1 Oryza sativa Japonica Group cDNA clone:J033044H21, full insert sequence. |
