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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI10G20730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 879aa MW: 94193.6 Da PI: 5.7234 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 132 | 187 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k ORUFI10G20730.1 132 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 187 688999***********************************************998 PP | |||||||
2 | START | 129.9 | 2.9e-41 | 347 | 578 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeqW 72 la +aa++l ++ a+ep+Wv+ + e e ++ + e r+ +vv+m++ +lv +ld + +W ORUFI10G20730.1 347 LAATAADQLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-KW 428 678999******************66554333...........3333344444445567778888888888999*****************.** PP -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSE CS START 73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpS 150 e ++ ka t++ i+ g g+l lm+ae q+lsplv+ R++vf Ry+ +g+w+ivd + ++ ++svvR++++pS ORUFI10G20730.1 429 MELFPsivcKARTIQIINHGaasghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRRPS 520 **********************************************************9999*******55555555..356************ PP EEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 g++i++++ng+s+v+wveh+++ g + ++r v sg+a+ga +w++ lqrqce+ ORUFI10G20730.1 521 GCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 578 *********************98765449***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-19 | 116 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-22 | 119 | 183 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-19 | 130 | 193 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-18 | 132 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.95E-19 | 132 | 190 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.182 | 337 | 581 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-28 | 340 | 580 | No hit | No description |
CDD | cd08875 | 7.79E-101 | 341 | 577 | No hit | No description |
SMART | SM00234 | 9.3E-23 | 346 | 578 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-33 | 347 | 578 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-4 | 460 | 544 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.92E-15 | 603 | 775 | No hit | No description |
SuperFamily | SSF55961 | 1.92E-15 | 821 | 860 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 879 aa Download sequence Send to blast |
MFGDCQVLSS MAAMAGAASS ADALFASPLI PNPALAGFMS SSAAMPFHHF SNAAATLIPK 60 EEGLMGGLHV AKDEGMDLEM DMELSGGSGS AHLDGLLSFA DVDDDHKPQH SGHDQPPDAA 120 QPSGAAGGNA KKKRYHRHTA HQIQQMEALF KECPHPDDKQ RLKLSQELGL KPRQVKFWFQ 180 NRRTQMKAQQ DRADNVILRA ENENLKSDNF RLQAAIRNVV CPNCGHAAVL ADMSYEEQQL 240 RIENARLKDE LDRLACIATR YGGGGGRQPV LSTSALSCIS APPPVLMPPL DLDMNVYSRH 300 FAEQAPVMGC GDLIPPPVVP QHDGAAAYMG AMMAPVQEQD KQLVVDLAAT AADQLARMCR 360 AGEPLWVRQR GAEVMAVEEH ARMFSWPVDG AKQGDGGAVA RAEGTRDNAV VIMNSINLVD 420 AFLDANKWME LFPSIVCKAR TIQIINHGAA SGHLGSGTLL LMQAEVQFLS PLVAAREVVF 480 FRYCVHNADE GSWAIVDFPA EGFEEGLLQA SVVRCRRRPS GCIIQDMPNG YSRVVWVEHM 540 EMVGEEKPLQ PVFRDYVASG AAFGATRWLS ILQRQCERLA SELARNIADL GVIRTPEART 600 NMMKLSQRMI TTFCANISAS GTQSWTALSD STQDTIRVTT RKNTEPGQPS GVILTAVSTS 660 WLPFTHQQVF ELLADEQQRC QLEILSNGGS LHEVAHIANG SHPRNCISLL RINAASNSSQ 720 NVELLLQESS THPDGGSLVV FATVDVDAIQ VTMSGEDPSY IPLLPLGFAI FPATSPSPAA 780 APTISSSTTT TTGNGNGETS STPPRNSSSN NNNADELLPP NGCLLTVGMQ VLASAVPSAK 840 LNLSSVTAIN SHVCNAIHQI TAALKGSAGG AGGEPASDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB101646 | 0.0 | AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613461.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_025876369.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q336P2 | 0.0 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A0E0R2V4 | 0.0 | A0A0E0R2V4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G20730.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
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