PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 879aa MW: 94193.6 Da PI: 5.7234

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI10G20730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	132	187	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k ORUFI10G20730.1 132 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 187 688999***********************************************998 PP
2	START	129.9	2.9e-41	347	578	2	206
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeqW 72 la +aa++l ++ a+ep+Wv+ + e e ++ + e r+ +vv+m++ +lv +ld + +W ORUFI10G20730.1 347 LAATAADQLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-KW 428 678999****************66554333...........3333344444445567778888888888999*************. PP -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSE CS START 73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpS 150 e ++ ka t++ i+ g g+l lm+ae q+lsplv+ R++vf Ry+ +g+w+ivd + ++ ++svvR++++pS ORUFI10G20730.1 429 MELFPsivcKARTIQIINHGaasghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRRPS 520 ********************************************************9999***55555555..356******** PP EEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 g++i++++ng+s+v+wveh+++ g + ++r v sg+a+ga +w++ lqrqce+ ORUFI10G20730.1 521 GCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 578 *****************98765449*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.0E-19	116	190	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-22	119	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	129	189	IPR001356	Homeobox domain
SMART	SM00389	3.4E-19	130	193	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-18	132	187	IPR001356	Homeobox domain
CDD	cd00086	6.95E-19	132	190	No hit	No description
PROSITE pattern	PS00027	0	164	187	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.182	337	581	IPR002913	START domain
SuperFamily	SSF55961	1.65E-28	340	580	No hit	No description
CDD	cd08875	7.79E-101	341	577	No hit	No description
SMART	SM00234	9.3E-23	346	578	IPR002913	START domain
Pfam	PF01852	2.0E-33	347	578	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.1E-4	460	544	IPR023393	START-like domain
SuperFamily	SSF55961	1.92E-15	603	775	No hit	No description
SuperFamily	SSF55961	1.92E-15	821	860	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
MFGDCQVLSS MAAMAGAASS ADALFASPLI PNPALAGFMS SSAAMPFHHF SNAAATLIPK 60 EEGLMGGLHV AKDEGMDLEM DMELSGGSGS AHLDGLLSFA DVDDDHKPQH SGHDQPPDAA 120 QPSGAAGGNA KKKRYHRHTA HQIQQMEALF KECPHPDDKQ RLKLSQELGL KPRQVKFWFQ 180 NRRTQMKAQQ DRADNVILRA ENENLKSDNF RLQAAIRNVV CPNCGHAAVL ADMSYEEQQL 240 RIENARLKDE LDRLACIATR YGGGGGRQPV LSTSALSCIS APPPVLMPPL DLDMNVYSRH 300 FAEQAPVMGC GDLIPPPVVP QHDGAAAYMG AMMAPVQEQD KQLVVDLAAT AADQLARMCR 360 AGEPLWVRQR GAEVMAVEEH ARMFSWPVDG AKQGDGGAVA RAEGTRDNAV VIMNSINLVD 420 AFLDANKWME LFPSIVCKAR TIQIINHGAA SGHLGSGTLL LMQAEVQFLS PLVAAREVVF 480 FRYCVHNADE GSWAIVDFPA EGFEEGLLQA SVVRCRRRPS GCIIQDMPNG YSRVVWVEHM 540 EMVGEEKPLQ PVFRDYVASG AAFGATRWLS ILQRQCERLA SELARNIADL GVIRTPEART 600 NMMKLSQRMI TTFCANISAS GTQSWTALSD STQDTIRVTT RKNTEPGQPS GVILTAVSTS 660 WLPFTHQQVF ELLADEQQRC QLEILSNGGS LHEVAHIANG SHPRNCISLL RINAASNSSQ 720 NVELLLQESS THPDGGSLVV FATVDVDAIQ VTMSGEDPSY IPLLPLGFAI FPATSPSPAA 780 APTISSSTTT TTGNGNGETS STPPRNSSSN NNNADELLPP NGCLLTVGMQ VLASAVPSAK 840 LNLSSVTAIN SHVCNAIHQI TAALKGSAGG AGGEPASDQ

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

MFGDCQVLSS MAAMAGAASS ADALFASPLI PNPALAGFMS SSAAMPFHHF SNAAATLIPK  60
EEGLMGGLHV AKDEGMDLEM DMELSGGSGS AHLDGLLSFA DVDDDHKPQH SGHDQPPDAA  120
QPSGAAGGNA KKKRYHRHTA HQIQQMEALF KECPHPDDKQ RLKLSQELGL KPRQVKFWFQ  180
NRRTQMKAQQ DRADNVILRA ENENLKSDNF RLQAAIRNVV CPNCGHAAVL ADMSYEEQQL  240
RIENARLKDE LDRLACIATR YGGGGGRQPV LSTSALSCIS APPPVLMPPL DLDMNVYSRH  300
FAEQAPVMGC GDLIPPPVVP QHDGAAAYMG AMMAPVQEQD KQLVVDLAAT AADQLARMCR  360
AGEPLWVRQR GAEVMAVEEH ARMFSWPVDG AKQGDGGAVA RAEGTRDNAV VIMNSINLVD  420
AFLDANKWME LFPSIVCKAR TIQIINHGAA SGHLGSGTLL LMQAEVQFLS PLVAAREVVF  480
FRYCVHNADE GSWAIVDFPA EGFEEGLLQA SVVRCRRRPS GCIIQDMPNG YSRVVWVEHM  540
EMVGEEKPLQ PVFRDYVASG AAFGATRWLS ILQRQCERLA SELARNIADL GVIRTPEART  600
NMMKLSQRMI TTFCANISAS GTQSWTALSD STQDTIRVTT RKNTEPGQPS GVILTAVSTS  660
WLPFTHQQVF ELLADEQQRC QLEILSNGGS LHEVAHIANG SHPRNCISLL RINAASNSSQ  720
NVELLLQESS THPDGGSLVV FATVDVDAIQ VTMSGEDPSY IPLLPLGFAI FPATSPSPAA  780
APTISSSTTT TTGNGNGETS STPPRNSSSN NNNADELLPP NGCLLTVGMQ VLASAVPSAK  840
LNLSSVTAIN SHVCNAIHQI TAALKGSAGG AGGEPASDQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB101646	0.0	AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613461.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_025876369.1	0.0	homeobox-leucine zipper protein ROC3
Swissprot	Q336P2	0.0	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A0E0R2V4	0.0	A0A0E0R2V4_ORYRU; Uncharacterized protein
STRING	ORUFI10G20730.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7846	34	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]