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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORUFI10G19970.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 339aa MW: 36489.9 Da PI: 10.4168 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORUFI10G19970.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 72.1 | 9.7e-23 | 55 | 144 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++ + ++s +qC++k+e+l+kry+++++++ +r+++ ++p+f l+
ORUFI10G19970.1 55 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 144
8*************************************99998888899**************************98443..47****9886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MPRRRAVPPL PRWAAPPTTT TTAPPRDKPR GGXPAAAAVS SGGAGGSGRR LPPPCWTHEE 60 TLALIEAYRD RWEGLRKGNL RASDWDDVAG AVTARCGRFP TATHKSGVQC RHKIEKLRKR 120 YRAERARAAG RSKGPKWPFF PLLHDLAGGG APDPSPNPII KIKSKGPAAA AASPSPASPS 180 PVSSPSSEED EEEEAAADAG RSRSLHGLIS NGGSGSGLRF TIPKASRSKP VAQREQPTAI 240 KVEKSEEDAE AEAMAEVASA LRAVGDKFLR MEERRLEISL QIEKERMESE MKRTQTLLDA 300 QQLFVEAFLG KQQQHHHHHK KAKVISAAAA AATAAMDED
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC084763 | 0.0 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. |
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |