PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G19390.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 425aa    MW: 44365.6 Da    PI: 5.4093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G19390.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-122472861155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  ORUFI10G19390.2 247 KRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 286
                      7******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.157236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15247307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-13247290No hitNo description
PfamPF000102.6E-9247286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYNE VAELTWEKGN  60
ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA  120
RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPREV VGEDGRRACA SQGSAAPGRR  180
GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRGMC  240
DEDEHVKRRD RINQKMKTLQ KLVPNSSKTD KASMLDEVID YLKQLQAQVQ VMSRMGSMMM  300
PMGMAMPQLQ MSVMAQMAQM AQIGLSMMNM GQAGGYAPMH MHTPPFLPVS WDAAASSSSA  360
AAADRPPQPT GAATSDAFSA FLASQAAQQN AQQPNGMEAY NRMMAMYQKL NHQQQQQDQP  420
SNSRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693000.0AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.10.0transcription factor UNE10 isoform X1
RefseqXP_015612717.10.0transcription factor UNE10 isoform X1
TrEMBLA0A0E0R2C60.0A0A0E0R2C6_ORYRU; Uncharacterized protein
STRINGORUFI10G19390.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-25bHLH family protein