PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G08490.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1033aa    MW: 115218 Da    PI: 6.0703
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G08490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.8e-56221392118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  ORUFI10G08490.1  22 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 115
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  ORUFI10G08490.1 116 QRRTYWMLEEDFMHIVLVHYLETK 139
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9318144IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7721139IPR005559CG-1 DNA-binding domain
PfamPF038598.5E-5024137IPR005559CG-1 DNA-binding domain
CDDcd001020.00542453541No hitNo description
Gene3DG3DSA:2.60.40.101.8E-6453539IPR013783Immunoglobulin-like fold
PfamPF018331.9E-8454532IPR002909IPT domain
SuperFamilySSF812962.96E-18454540IPR014756Immunoglobulin E-set
SuperFamilySSF484032.95E-15646749IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.6E-16648751IPR020683Ankyrin repeat-containing domain
CDDcd002041.98E-11649747No hitNo description
PROSITE profilePS5029715.433655749IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736688720IPR002110Ankyrin repeat
SuperFamilySSF525405.84E-8848901IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37850872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748851880IPR000048IQ motif, EF-hand binding site
PfamPF006120.023852871IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059873895IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542875898IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4876895IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MAAAADARRF AVVPQLDIAQ ILKEAQQRWL RPAEICEILK NYKSFRIAPE PPNRPQSGSL  60
FLFDRKVLRY FRKDGHNWRK KKDGKTVKEA HERLKSGSID VLHCYYAHGE ENENFQRRTY  120
WMLEEDFMHI VLVHYLETKG GKSRTRGNND MHQAAVMDSP LSQLPSQTID GESSLSGQFS  180
EYEEAESGGT GYHSFTQMQQ QQNGIGPVTD ASMFSSRVSA SSIGNYQGQH AMGHTTNFYS  240
SSQHDSPLVL SDPNLELANN GHESLWNGVM KPDEGTVQMT HLQPPVHPEQ GMFTTEGQGV  300
EYLTFDEVYS DGLSLKDIGA AGADVEPFWQ FSSNSYLTEA IAFQLSSATA DISATENSVQ  360
QNDGSLGAAI GFPFLKTQSS NLSDILKDSF KKSDSFTRWM SKELLDVEDS QIQSSSGAYW  420
NTEEADSIIE ASSREPLDQF TVAPMVLQDQ LFSIVDFSPS WTYAGSKTKV LVTGRFLHAN  480
EVTERCKWSC MFGEVEIQAE ISADGTLRCY SPPHKPGRVP FYVTCSNRLA CSEVREFEFR  540
PSDSQYMDAP SPLGATNKVY FQIRLDNLLS LGPDVYQATI TNPSKEMIDL SKKISSLLAN  600
NDEWSKLLKL ADDNEPLSHD QQDQYAENLI KEKLHVWLLH KVGDGGKGPS VLDDEGLGVL  660
HLAAALGYDW AIRPTVTAGV NINFRDFHGW TALHWAAFCG RERTVVALIA LGAAPGALTD  720
PHPNYPAEST PADLASANGH KGISGFLAES SLTSHLQALN LKEANMSEIS GLPGIGDVTE  780
RNASQPAIGD SLGAVRNAAQ AAARIYQVFR VQSFQRKQAV QYEGDKGGIS DEHALSLLSM  840
KPSKSGQLDP LHAAASRIQN KYRGWKGRKE FLLFRQRIVK IQAHVRGHQV RKHYRKIVWS  900
VGIVEKVILR WRRRRAGLRG FRPTEGAIES SSGGTSSNLV KDKPAGDDYD FLQEGRKQTE  960
ERLQKALARV KSMVQYPEAR DQYQRILNVV SKMQESQTVQ EKILDESTEM DEGDFMSEFK  1020
ELWDDDTPLP GYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614397.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A0E0QYD90.0A0A0E0QYD9_ORYRU; Uncharacterized protein
STRINGORUFI10G08490.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains