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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G20290.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 837aa MW: 92260.6 Da PI: 6.6949 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.7 | 5.5e-29 | 522 | 572 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ ORUFI09G20290.2 522 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 572 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.734 | 511 | 592 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.6E-26 | 524 | 572 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.5E-21 | 729 | 825 | No hit | No description |
SMART | SM00666 | 2.0E-18 | 739 | 822 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.9E-24 | 739 | 820 | No hit | No description |
PROSITE profile | PS51745 | 18.561 | 739 | 822 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.2E-15 | 740 | 820 | IPR000270 | PB1 domain |
CDD | cd06407 | 5.94E-43 | 740 | 820 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence Send to blast |
MEEGDPQPSI SLARTPSEGT AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL 60 TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDADVLVQLW VPVKGNDGQL 120 VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY 180 FTSYEYPRIS HAQYLDVHGT MGLPVFERGN YSCLGVIELI MTKQKLNFTS ELNTICSALQ 240 AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR 300 HSDENYKYCI STIDAACYVN EPQMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS 360 STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG 420 TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPRGKNKVE ELSFGDNTRE DREETSWTTL 480 VRTSQKGSDL AELHTHGGQG SSQAGDQTSK EGSKVKRRTK TEKTVSLQVL RQYFAGSLKD 540 AAKSLGVCPT TLKRICRQHG INRWPSRKIK KVDHSLRKLQ QIIDSVHGAE TAFQLNTLYK 600 DLTNTSVSSD NNLSGSVTVP LANQNNLDFE KHQHHRLSSN IPSTSLSHSS CSQSSDSSPS 660 CSGGATKHSP QVGADQVRSG CLPQHSPVQT LQTEAASINE HFSGQEAPID LLQDVAEKAN 720 GEQHMSQSPS SPKQTANVGM RVKVTFGSEK VRFRLKPECD FQELKQEISK RLGIVDMNSL 780 IVKYLDDDSE WVLMTCDADL HECFHVYKLA DIQTIKISVH LAASPTTRIT IGHTGFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005679 | 0.0 | AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612116.1 | 0.0 | protein NLP1-like isoform X2 | ||||
Refseq | XP_015612117.1 | 0.0 | protein NLP1-like isoform X2 | ||||
Refseq | XP_025875998.1 | 0.0 | protein NLP1-like isoform X2 | ||||
TrEMBL | A0A0E0QUR7 | 0.0 | A0A0E0QUR7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G20290.3 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |