PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G20290.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 837aa    MW: 92260.6 Da    PI: 6.6949
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G20290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.75.5e-29522572252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  ORUFI09G20290.1 522 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 572
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.734511592IPR003035RWP-RK domain
PfamPF020429.6E-26524572IPR003035RWP-RK domain
SuperFamilySSF542778.5E-21729825No hitNo description
SMARTSM006662.0E-18739822IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.9E-24739820No hitNo description
PROSITE profilePS5174518.561739822IPR000270PB1 domain
PfamPF005641.2E-15740820IPR000270PB1 domain
CDDcd064075.94E-43740820No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MEEGDPQPSI SLARTPSEGT AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL  60
TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDADVLVQLW VPVKGNDGQL  120
VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY  180
FTSYEYPRIS HAQYLDVHGT MGLPVFERGN YSCLGVIELI MTKQKLNFTS ELNTICSALQ  240
AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR  300
HSDENYKYCI STIDAACYVN EPQMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPRGKNKVE ELSFGDNTRE DREETSWTTL  480
VRTSQKGSDL AELHTHGGQG SSQAGDQTSK EGSKVKRRTK TEKTVSLQVL RQYFAGSLKD  540
AAKSLGVCPT TLKRICRQHG INRWPSRKIK KVDHSLRKLQ QIIDSVHGAE TAFQLNTLYK  600
DLTNTSVSSD NNLSGSVTVP LANQNNLDFE KHQHHRLSSN IPSTSLSHSS CSQSSDSSPS  660
CSGGATKHSP QVGADQVRSG CLPQHSPVQT LQTEAASINE HFSGQEAPID LLQDVAEKAN  720
GEQHMSQSPS SPKQTANVGM RVKVTFGSEK VRFRLKPECD FQELKQEISK RLGIVDMNSL  780
IVKYLDDDSE WVLMTCDADL HECFHVYKLA DIQTIKISVH LAASPTTRIT IGHTGFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056790.0AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612116.10.0protein NLP1-like isoform X2
RefseqXP_015612117.10.0protein NLP1-like isoform X2
RefseqXP_025875998.10.0protein NLP1-like isoform X2
TrEMBLA0A0E0QUR70.0A0A0E0QUR7_ORYRU; Uncharacterized protein
STRINGORUFI09G20290.30.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein