PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORUFI09G12830.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 412aa MW: 45395.6 Da PI: 5.2008

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G12830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.3	4.8e-16	200	250	3	52
RWP-RK 3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 k+++ +dl++yF+ + k+AA L +++T+LK CR + ++RWP+R+i+sl ORUFI09G12830.1 200 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 250 899***************84499*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.356	180	270	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-16	201	250	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MATGGSSSSS NVPSGGAAGG GAGSGKLPMV PVGSIECLRK RCRQLRVLIH VNDHRKAVVV 60 LHAGEDGKPD HVLVQNVSPE GEASVQSTYR IDVSGETPES QAEMLNDWYT SFRMDTTGVL 120 YDSDQNVIYG VPRGHPGGDV PRSLAILPPA PKKNQHGKAP ATESNSSLVE EPLLLVQTDQ 180 PAAIGKRKKF TFPDQRKRVK TMTKKDLESY FHITQKSAAH IGLSIGTTAL KNLCRANDLP 240 RWPYRQIASL DNKFNNNLKK QITGWNLGKA VQGVTKAFKL RKEKEEFYQK IMSSMPEQLQ 300 SIDEIVNSLP EADDDIDIED DEDNDDVIED NDDDNNHRKM VVVLHAGEDG KLDHILVQNN 360 SPDAEASVQS TYRINVSGET PELQAEMLND WYTSFRMDTT GVLYDSDQNG IN

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MATGGSSSSS NVPSGGAAGG GAGSGKLPMV PVGSIECLRK RCRQLRVLIH VNDHRKAVVV  60
LHAGEDGKPD HVLVQNVSPE GEASVQSTYR IDVSGETPES QAEMLNDWYT SFRMDTTGVL  120
YDSDQNVIYG VPRGHPGGDV PRSLAILPPA PKKNQHGKAP ATESNSSLVE EPLLLVQTDQ  180
PAAIGKRKKF TFPDQRKRVK TMTKKDLESY FHITQKSAAH IGLSIGTTAL KNLCRANDLP  240
RWPYRQIASL DNKFNNNLKK QITGWNLGKA VQGVTKAFKL RKEKEEFYQK IMSSMPEQLQ  300
SIDEIVNSLP EADDDIDIED DEDNDDVIED NDDDNNHRKM VVVLHAGEDG KLDHILVQNN  360
SPDAEASVQS TYRINVSGET PELQAEMLND WYTSFRMDTT GVLYDSDQNG IN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005419	1e-149	AP005419.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0046G12.
GenBank	AP005720	1e-149	AP005720.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1123_B08.
GenBank	AP014965	1e-149	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696653.1	1e-163	PREDICTED: uncharacterized protein LOC107304984
TrEMBL	A0A0E0QS21	0.0	A0A0E0QS21_ORYRU; Uncharacterized protein
STRING	ORUFI09G12830.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15217	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-08	RWP-RK domain-containing protein