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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G04820.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 219aa MW: 25733 Da PI: 6.2676 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83 | 2.9e-26 | 80 | 129 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl ORUFI09G04820.2 80 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 129 78**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 19.27 | 64 | 149 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.1E-21 | 81 | 129 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MCVPSLYNDL EKVFRFQNVE KIPKLMQCDS EEKLSSWDAR DKSSDEVHAS ESDSDDDLQS 60 GEEEKPTVQK QRRANKKHIA SITLVDIAQY FHLPIREASR TLKIGVSILK RKCRQYNIPR 120 WPHRKIKSLD SLIQDLEYVI DDGDDHDDTG DDVQQEKHKQ TAEEKQEAIM ALTRRKQMLE 180 TEKETIQQIP AMDLKVETKQ FREDVFKRRY RAKKDLAND |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 214 | RRYRAKKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606628 | 1e-137 | AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence. | |||
GenBank | AP014960 | 1e-137 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-137 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634161.1 | 1e-159 | protein RKD5 isoform X1 | ||||
TrEMBL | A0A0E0QPB2 | 1e-159 | A0A0E0QPB2_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM04G21810.1 | 1e-158 | (Oryza glumipatula) | ||||
STRING | ONIVA04G20320.1 | 1e-158 | (Oryza nivara) | ||||
STRING | ORGLA04G0188200.1 | 1e-158 | (Oryza glaberrima) | ||||
STRING | OBART04G21780.1 | 1e-158 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 4e-38 | RWP-RK domain-containing protein |