![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI09G04820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 322aa MW: 37227.4 Da PI: 9.2911 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.1 | 5.4e-26 | 183 | 232 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl ORUFI09G04820.1 183 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 232 78**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 19.27 | 167 | 252 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.9E-21 | 184 | 232 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MTRKAPGAVR SVHGYKVYGR GGRRRWERWV EREFVLTPAS CREVPAPVAP PRILPAEWRG 60 RPAYREGQVV AAGAWRCILA FDSAAAPPRT PPPVLSPFLN PRLMCVPSLY NDLEKVFRFQ 120 NVEKIPKLMQ CDSEEKLSSW DARDKSSDEV HASESDSDDD LQSGEEEKPT VQKQRRANKK 180 HIASITLVDI AQYFHLPIRE ASRTLKIGVS ILKRKCRQYN IPRWPHRKIK SLDSLIQDLE 240 YVIDDGDDHD DTGDDVQQEK HKQTAEEKQE AIMALTRRKQ MLETEKETIQ QIPAMDLKVE 300 TKQFREDVFK RRYRAKKDLA ND |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 310 | 317 | RRYRAKKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL606628 | 1e-155 | AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence. | |||
GenBank | AP014960 | 1e-155 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-155 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634161.1 | 0.0 | protein RKD5 isoform X1 | ||||
TrEMBL | A0A0E0QPB1 | 0.0 | A0A0E0QPB1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G04820.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10673 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-45 | RWP-RK domain-containing protein |