PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI08G24030.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 444aa MW: 45368.5 Da PI: 7.3017

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI08G24030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	85.3	7.4e-27	117	187	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p v+vsg+e rf efDe+krsCr+rL++hn+rrrk+q+ ORUFI08G24030.1 117 CAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFSPP------TIEFDEAKRSCRKRLDGHNRRRRKPQP 187 ***************************************864......579*******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-21	110	172	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.982	114	185	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-27	115	190	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.9E-18	117	184	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG 60 LGEFGGGGAQ PRVAVAGEPA KGKGPAAAAT GAAAAASSAP AKRPRGAAAG QQQCPSCAVD 120 GCKEDLSKCR DYHRRHKVCE AHSKTPLVVV SGREMRFSPP TIEFDEAKRS CRKRLDGHNR 180 RRRKPQPDPM NSASYLASQQ GARFSPFATP RPEASWTGMI KTEESPYYTH HQIPLGISSR 240 QQHFVGSTSD GGRRFPFLQE GEISFGTGAG AGGVPMDQAA AAAAASVCQP LLKTVAPPPP 300 PHGGGGKMFS DGGLTQVLDS DCALSLLSAP ANSTAIDVGG GRVVVQPTEH IPVAQPLISG 360 LQFGGGGGSS AWFAARPHHQ AATGAAATAV VVSTAGFSCP VVESEQLNTV LSSNDNEMNY 420 NGMFHVGGEG SSDGTSSSLP FSWQ

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG  60
LGEFGGGGAQ PRVAVAGEPA KGKGPAAAAT GAAAAASSAP AKRPRGAAAG QQQCPSCAVD  120
GCKEDLSKCR DYHRRHKVCE AHSKTPLVVV SGREMRFSPP TIEFDEAKRS CRKRLDGHNR  180
RRRKPQPDPM NSASYLASQQ GARFSPFATP RPEASWTGMI KTEESPYYTH HQIPLGISSR  240
QQHFVGSTSD GGRRFPFLQE GEISFGTGAG AGGVPMDQAA AAAAASVCQP LLKTVAPPPP  300
PHGGGGKMFS DGGLTQVLDS DCALSLLSAP ANSTAIDVGG GRVVVQPTEH IPVAQPLISG  360
LQFGGGGGSS AWFAARPHHQ AATGAAATAV VVSTAGFSCP VVESEQLNTV LSSNDNEMNY  420
NGMFHVGGEG SSDGTSSSLP FSWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-18	107	184	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	184	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109469	0.0	AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649377.1	0.0	squamosa promoter-binding-like protein 16
Swissprot	Q6YZE8	0.0	SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBL	A0A0E0QLL8	0.0	A0A0E0QLL8_ORYRU; Uncharacterized protein
STRING	ORUFI08G24030.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1755	37	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-31	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice. Theor. Appl. Genet., 2011. 122(8): p. 1489-96 [PMID:21327937] Wang S, et al. Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet., 2012. 44(8): p. 950-4 [PMID:22729225] Wang S, et al. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet., 2015. 47(8): p. 949-54 [PMID:26147620] Wang Y, et al. A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.). Planta, 2016. 243(2): p. 459-71 [PMID:26474992] Lee CM, et al. Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y), 2015. 8(1): p. 33 [PMID:26519289] Bessho-Uehara K, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74 [PMID:27466405]