PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G18170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 416aa MW: 45226.4 Da PI: 5.3283 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.7e-11 | 55 | 111 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g+ ORUFI08G18170.1 55 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWGH 111 58******************77779888877777999999**************997 PP | |||||||
2 | AP2 | 48.1 | 2.9e-15 | 153 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg++ t eeAa a++ a+ + +g ORUFI08G18170.1 153 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 204 89****99**********99966...3.6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-14 | 54 | 120 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-20 | 55 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.465 | 55 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-12 | 55 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-5 | 56 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-9 | 56 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-5 | 100 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-22 | 153 | 214 | No hit | No description |
Pfam | PF00847 | 6.7E-10 | 153 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-17 | 153 | 214 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.728 | 154 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-25 | 154 | 218 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 154 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAKRRSNGET AAASSDDSSS GVCGGGGGGE VEPRRRQKRP RRSAPRDCPS QRSSAFRGVT 60 RHRWTGRFEA HLWDKNTWNE SQSKKGRQGA YDGEEAAARA YDLAALKYWG HDTVLNFPLS 120 TYDEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL 180 YLGTYATQEE AAVAYDIAAI EHRGLNAVTN FDINLYIRWY HGSCRSSSAA AATTIEDDDF 240 AEAIAAALQG VDEQPSSSPA TTRQLQTADD DDDDLVAQLP PQLRPLARAA STSPIGLLLR 300 SPKFKEIIEQ AAAAAASSSG SSSSSSTDSP SSSSSSSLSP SPLPSPPPQQ QPTVPKDDQY 360 NVDMSSVAAA RCSFPDDVQT YFGLDDDGFG YPEVDTFLFG DLGAYAAPMF QFELDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 0.0 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651011.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A0E0QJM0 | 0.0 | A0A0E0QJM0_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6Z8R9 | 0.0 | Q6Z8R9_ORYSJ; AP2/EREBP transcription factor-like protein | ||||
STRING | ORUFI08G18170.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 3e-89 | AP2 family protein |