PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G06360.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1880aa    MW: 210795 Da    PI: 8.1119
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G06360.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.75.4e-1498155259
                      --SS-EEEEEEE--TT-SS-EEE.EEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsY.YrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++Wr  Gq +++g  +p  + Y+C+ ++C v+k + rsa d++++e++ +g Hnh+
  ORUFI08G06360.2  98 DDGFHWRMCGQSTIQGGLCPTVFsYQCALPNCGVRKSITRSA-DGQTIETVCKGCHNHP 155
                      8*******************9988******************.***************8 PP
2WRKY48.12.2e-1511011158259
                       --SS-EEEEEEE--TT-SS-E.EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    2 dDgynWrKYGqKevkgsefpr.sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       dDgy+Wr  Gq +++g ++    YY+C++a+C+v+k v rsa d++++++   g Hnh+
  ORUFI08G06360.2 1101 DDGYHWRMCGQNTIQGEPCQTiFYYQCAQANCMVQKSVARSA-DGQTTQTFSMGVHNHP 1158
                       8****************986527*******************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.54E-1491156IPR003657WRKY domain
PROSITE profilePS5081112.392157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-1293156IPR003657WRKY domain
SMARTSM007749.1E-797156IPR003657WRKY domain
PfamPF031061.0E-1298155IPR003657WRKY domain
PROSITE profilePS508089.908270329IPR003656Zinc finger, BED-type
SMARTSM006141.1E-16270321IPR003656Zinc finger, BED-type
SuperFamilySSF576673.09E-7273321No hitNo description
PfamPF028922.4E-6285328IPR003656Zinc finger, BED-type
SuperFamilySSF530982.58E-89406875IPR012337Ribonuclease H-like domain
PfamPF143723.8E-22647746IPR025525hAT-like transposase, RNase-H fold
PfamPF056996.8E-18791873IPR008906HAT, C-terminal dimerisation domain
PfamPF035953.7E-6891957IPR004695Voltage-dependent anion channel
PROSITE profilePS5081113.04610951160IPR003657WRKY domain
SuperFamilySSF1182901.18E-1410961159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-1310981159IPR003657WRKY domain
SMARTSM007745.9E-811001159IPR003657WRKY domain
PfamPF031061.5E-1311011158IPR003657WRKY domain
SMARTSM006146.7E-1412371288IPR003656Zinc finger, BED-type
PfamPF028925.5E-612401285IPR003656Zinc finger, BED-type
SuperFamilySSF576674.64E-612401288No hitNo description
SuperFamilySSF530989.1E-8413851845IPR012337Ribonuclease H-like domain
PfamPF143729.5E-1916181717IPR025525hAT-like transposase, RNase-H fold
PfamPF056993.8E-1917621844IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009791Biological Processpost-embryonic development
GO:0055085Biological Processtransmembrane transport
GO:0005829Cellular Componentcytosol
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1880 aa     Download sequence    Send to blast
MATPPHVSIF QAPVPTWLAG SISDSIQTGR KTRVKDMENQ SGQPQYAMAD QGFHPFSPFM  60
LAPSTTMQQH VGSSSSTPVI QVAALPSHAY YGNIDVADDG FHWRMCGQST IQGGLCPTVF  120
SYQCALPNCG VRKSITRSAD GQTIETVCKG CHNHPRQSLR WLGDGSERLE PISQEIVLLE  180
ASDASGAAGG PSVPGTGNGH GQSSGSSDSC RDDDGDLGID GNASVGDANA VKSGQVPAPA  240
KEITVHSACE VDILNNSVRH ENPQPRKKVR SKSTVWEEFE VVLIDGKVQT AECKHCKKGL  300
SAKTSGGTSH LIRHLKICPA QHGTSRVQKK CSSLADLPIV KSWKDDQESS LDEIIRSIVS  360
NLCPFSAMYS ASFAQFLAGR NPVLNMVQQA TVEEKFLSVF HNEKMKLKEK ITATPGGVFL  420
SLGEWQRLFY IQVRVACLTV HFIDEDWKIN RKTIRCSLSV FGKSDILSLY PHWQSDIVLA  480
EKVLKEVVQD WGLLDKLLGV TLQRSVDKKA PLHLEDDITG RNYLLSKCRL LSIPCMVDAL  540
HELMDSTVLD MESTWSHYMT SSPERKQKYQ EILSQLHLDR PSLGSKGWYF TFYFSEAALQ  600
FIKSFPLPDA KPNCQSGPWE PSFDDLEATE NYCKIARSAY RVIKVVSGPH NMTFNSYFHV  660
IWSLRAAIQE LPSIKNIGRV FDVAYMQKKF DRNWKKWYLW LSIAVVLDPR YKLGFIELCF  720
RQAFSHVAGM YFSEVRAKLH ELYIQYSYVN EQSKEILDHK NNCSDIQISA PLHNKGQNST  780
TAQAAVEEFK ELYEYLGGGL CTQDDSFDIL KWWRGNSSAY PTLAMMARDI LAIPGCAVST  840
ESAFDQCDQR AELFDGKLRP ETTEALICAQ SWIKSSGTAD ADDGNKNTSP MVNHVLWWIA  900
LALMGLVFFI YLLKVVFYFE FEAVRREFYH PIRADFFAPW IACLFLVQGV PRPVTKVHHG  960
VWYVLMTPWR RRRHRGRGSV GAATGGGGND EVGVGRGVPP ASTGFSRRLH RSPCLLPRRG  1020
RAPRPGWLAR SIQARRIARE MDNQSGQPQY GMADHGFRPF SASISAPSTA QQHTGSSSNT  1080
AVIQVATPPS HTDYGNIYLA DDGYHWRMCG QNTIQGEPCQ TIFYYQCAQA NCMVQKSVAR  1140
SADGQTTQTF SMGVHNHPQR SVRWLRDGSE RLEPMSQVGI DGDAAAAAAA AAAADANALQ  1200
RHVAAPIQGN IARTASEVGI LDHRARHENS HPRKKRRFKS KVWEEFKAVL IDGKVQSAIC  1260
NHCKNCLVGE TTKGTSHLRR HLKSCPAKAG TSRVQKKQRI STLQPDSSVS KDLKYGQVNP  1320
LEEFMRAIVS KLCPFSAMYG ASFAPFLAGR NPVLNMVPQA TLEEKFLSVY EKEKQKLKEK  1380
IIATPGGVFL SLDSWYWDAD VELYIICITV HFIDGDWKIN RKTIRCSPKL VGSYMLGLLP  1440
RLKSNIVNVK MVLKEVVQDW GLQEKLLGVT LQPSEDSIKE ASLHLEDDLT GRKYLVAKCK  1500
LLNIPCMVTA LHELIEDSIM CDMTPAWSCY MTSSPERKQK YEQVLSQLHL DGASYGSKNW  1560
YSQFCLYEAA LQFIKSFPLP EDRRHQTNPL RPSFDDLEAI ESFCKIARPI YIAVKAISGP  1620
HNVMYNSYFH VIWRLVAVIR ELPSMNNTER NFHVPVVQKE FDNNWRKWYL WLSIAVVLDP  1680
RYKLGFIELC FRQDFSHDAG MYISEVRAKL YELYIQYSYD NGQSNEILNN RNSDSGTQIS  1740
APLDNQIQNY TIAQAAVEEF KELNEYLGGG LCPQNDSFDI LKWWRDNSST YPTLAKMARD  1800
ILAIPGCAVS AESAFDSCDQ RVEVFKGKFR PETAEALVCA QSWIKSSVTY IGYFQSSKRN  1860
SPFDTVQNSL PKEALLDATT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112331238KKRRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036960.0AK103696.1 Oryza sativa Japonica Group cDNA clone:J033136J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
TrEMBLA0A0E0QFG60.0A0A0E0QFG6_ORYRU; Uncharacterized protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.19e-12WRKY DNA-binding protein 4