PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G03850.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 265aa    MW: 28735.7 Da    PI: 4.6467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G03850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.42.4e-2749138192
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+kv tpsdv+k++rlv+pk++ae++    + +++l +ed+ g  W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++    ++++
  ORUFI08G03850.1  49 FDKVVTPSDVGKLNRLVVPKQHAERFFPAAAAGTQLCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRA--ADGRY 138
                      89************************666678889************************************************43..45544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3645137IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-2347140No hitNo description
SuperFamilySSF1019361.31E-2747140IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-2449138IPR003340B3 DNA binding domain
SMARTSM010191.5E-1849150IPR003340B3 DNA binding domain
PROSITE profilePS5086313.94449146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LGQEPAPAAA AAALREHMFD KVVTPSDVGK  60
LNRLVVPKQH AERFFPAAAA GTQLCFEDRA GTPWRFRYSY WGSSQSYVMT KGWSRFVRAA  120
RLSAGDTVSF SRAADGRYFI DYRHCHRHGG RDISFASAAT AMPAAAWPLF GRVQTAAPVS  180
YGGGHGSAAA ATMFLDTVAP VAAAGGHRGE VGPSGQRSFR LFGVNVECGG DVDAAAEEED  240
ADDDVDDGDH RRGEEMELVM WTNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-45451444112B3 domain-containing transcription factor NGA1
5os9_B1e-45451444112B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046980.0AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649372.11e-140putative B3 domain-containing protein Os08g0157700
SwissprotQ7EZD51e-141Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700
TrEMBLA0A0E0QEK30.0A0A0E0QEK3_ORYRU; Uncharacterized protein
STRINGORUFI08G03850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-44B3 family protein