PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 304aa MW: 33080.2 Da PI: 6.7092

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI07G25040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	90.3	2.3e-28	39	108	2	71
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ + ++ ORUFI07G25040.1 39 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKILTGGSS 108 9**************************************************************9776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-30	32	127	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.7E-32	35	202	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.52E-26	38	104	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.1E-19	39	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-24	39	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	78	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	90	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAFLVERCGE MVVSMEMGPH GGVGGGGGAA AGKPVPAPFL TKTYQLVDDP CTDHIVSWGE 60 DDTTFVVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KILTGGSSPK ETPPIATIYI 120 PPPLLPSPQP YHHHHHLNPF SLPPPPPAYH HHHLIQEEPA TTAHCTVAGD GGEGGDFLAA 180 LSEDNRQLRR RNSLLLSELA HMKKLYNDII YFLQNHVAPV TTTTTTPSST AMAAAQHHLP 240 AAASCRLMEL DSPDHSPPPP PPPPKTPATD GGDTVKLFGV SLHGRKKRAH RDDDDGVHDQ 300 GSEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-20	26	103	17	93	Heat shock factor protein 1
5d5v_B	9e-20	26	103	17	93	Heat shock factor protein 1
5d5v_D	9e-20	26	103	17	93	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063952	0.0	AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBank	AP004671	0.0	AP004671.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524G08.
GenBank	AP005292	0.0	AP005292.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1340_C08.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	AY344494	0.0	AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645691.1	1e-150	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	1e-151	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A0E0QBV5	0.0	A0A0E0QBV5_ORYRU; Uncharacterized protein
STRING	ORUFI07G25040.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-40	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]