PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G17770.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 318aa    MW: 34460.3 Da    PI: 11.6373
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G17770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.48.9e-07133170238
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCT CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklg 38 
                      ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l+
  ORUFI07G17770.1 133 KPRRNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLQ 170
                      89*****************99************99995 PP
2Wus_type_Homeobox59.19.9e-20132178248
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedk 48 
                        +++R +P+peQi+iLe++++sG+++P+++ei ri+++L+eyG++ +k
    ORUFI07G17770.1 132 PKPRRNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVXSK 178
                        578*****************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.0E-4133170IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALGVPPPPS RAYVSGPLRD DDTFGGDRVR RRRRWLKEQC PAIIVHGGGR RGGVGHRALA  60
AGVSKMRLPA LNAATHRIPS TSPLSIPQTL TITRDPPYPM LPRSHGHRTG GGGFSLKSSP  120
FSSVGEERVP DPKPRRNPRP EQIRILEAIF NSGMVNPPRD EIPRIRMQLQ EYGQVXSKPA  180
RATLTQAMSV TAAMDLLSPL RRSARPRQEQ RHEAHDVDAT KLGLLQHGFG IITLAVHVDV  240
ASSAAGVLPP IPSSPSPPDA AVTVASVAIT ASLTDFAANV GSINRTSMLD DLRKNLDKRW  300
PWVIAIFAAL DSALFRVQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0067531e-144AP006753.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04.
GenBankAP0149631e-144AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA3BKM21e-105WOX13_ORYSJ; WUSCHEL-related homeobox 13
TrEMBLA0A0E0Q9B30.0A0A0E0Q9B3_ORYRU; Uncharacterized protein
STRINGORUFI07G17770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-24homeobox-3