PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G09730.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 367aa    MW: 39972.8 Da    PI: 10.8885
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G09730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.92.2e-082222753687
             GRAS  36 dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsev 87 
                      +pm R++ayf++ALa r++r++++++++ +p+e +++   s++ ++al++++ +
  ORUFI07G09730.1 222 TPMPRVVAYFAKALALRVVRMWPHMFEISAPWELTDDAfnSDDDAMALRILNTI 275
                      79********************************98878899999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.8E-6222275IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAHHRLLSFD PTTMITLPLP TSPSLGFNLR PSYIFLTVLP ALFPTVPAHA RHALSAATAR  60
RLHARETAGG GDVRDGARGA VGRQAVLAHN GGHSEGGADA GTGIGVPQGH RERGTQGDVV  120
WHSCTGPSPS PSRCSTICSP TPEHMPPLRA RRRLACRPIR LGEEEKRREE EKRRDEKKEK  180
RRRKKRKKKK SAEDRMLLRC GSHRIPCKQN QGKLDGFTGG PTPMPRVVAY FAKALALRVV  240
RMWPHMFEIS APWELTDDAF NSDDDAMALR ILNTITRAKT ETSPGRAKAE EMFVRERMCN  300
GMVAAAVGKT GPGVAAVRRM GAPSSCVSTA DSVLASDALD TSSTGNLGNL SSHLNPLPPL  360
WPINDFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157RRRLACRP
2171185KRRDEKKEKRRRKKR
3171189KRRDEKKEKRRRKKRKKKK
4180185RRRKKR
5180186RRRKKRK
6181189RRKKRKKKK
7183187KKRKK
8183189KKRKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0Q6G60.0A0A0E0Q6G6_ORYRU; Uncharacterized protein
STRINGORUFI07G09730.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2366044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.14e-12GRAS family protein