PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G26670.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 353aa    MW: 38156.5 Da    PI: 10.9662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G26670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-172875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
  ORUFI06G26670.1 28 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 75
                     79******************************************9986 PP
2Myb_DNA-binding45.22.2e-1481124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l+++++ +lG++ W++I++++  gRt++++k++w++
  ORUFI06G26670.1  81 KGPFSPDEERLILRLHGLLGNK-WARISSYLH-GRTDNEIKNYWNT 124
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0752375IPR017930Myb domain
SuperFamilySSF466892.48E-3025122IPR009057Homeodomain-like
SMARTSM007171.6E-132777IPR001005SANT/Myb domain
PfamPF002495.3E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-222982IPR009057Homeodomain-like
CDDcd001672.61E-113075No hitNo description
PROSITE patternPS0017504352IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.66376130IPR017930Myb domain
SMARTSM007171.7E-1480128IPR001005SANT/Myb domain
PfamPF002499.7E-1481124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2483130IPR009057Homeodomain-like
CDDcd001676.85E-1083126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MARSGGGNGG GEGGGGGGNG GGGGGLKKGP WTQAEDKLLV DHVRRHGEGN WNAVRRETGL  60
QRCGKSCRLR WANHLRPDLR KGPFSPDEER LILRLHGLLG NKWARISSYL HGRTDNEIKN  120
YWNTRLKRRV RAGLTPYPPE IEREIAHLRA QNLNLRRRRR RWRRRHAXLP PLPNRPRELP  180
SNQFETATSG GGGGCDALLE SLLLGDDHLL PRPNPAMLRV GSMPELMYRE PSSSHVLHGG  240
GGGGGASDSD VTSQYPPGEE DPHYGGRWDF IFEDVKPKRK AASAVEEISG MFGIAPGSIP  300
GEWFNPGGVG SAAAAAGGAS APSPGPAAVR RHHRRRLHPR DAADHVVAAA AST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27261305108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RLKRRVR
2155162RRRRRRWR
3155163RRRRRRWRR
4156163RRRRRWRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116970.0AK111697.1 Oryza sativa Japonica Group cDNA clone:J023004F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693682.11e-133PREDICTED: myb-related protein Myb4, partial
TrEMBLA0A0E0Q1N40.0A0A0E0Q1N4_ORYRU; Uncharacterized protein
STRINGORUFI06G26670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-57myb domain protein 101