PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G23930.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 439aa MW: 47622.9 Da PI: 7.5731

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G23930.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.4e-18	89	138	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g ORUFI06G23930.1 89 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 138 78*****************......55**********************997 PP
2	AP2	40.5	6.8e-13	181	229	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+++GV+ +k g+W+A+I +k+++lg ++t+ eAaka+++a+ k ORUFI06G23930.1 181 SRFRGVTLHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAKAYDKAAIKC 229 789*****.7**77733....25******77*******9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.31E-15	89	147	IPR016177	DNA-binding domain
Pfam	PF00847	8.4E-10	89	138	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-31	90	152	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.688	90	146	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-17	90	146	IPR001471	AP2/ERF domain
CDD	cd00018	5.31E-23	181	241	No hit	No description
SuperFamily	SSF54171	6.21E-17	181	240	IPR016177	DNA-binding domain
Pfam	PF00847	9.4E-9	181	231	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-32	182	245	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.789	182	239	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.0E-17	182	240	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-5	183	194	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-5	221	241	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST 60 EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 120 TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS 180 SRFRGVTLHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAK AYDKAAIKCC GKEAVTNFDT 240 QAYEDELNLQ SWDSELDLEL SLGCSGGERA AGEVLHSAPS NQRTSLTFML PEEEEMTACH 300 RQRSIWARPS LAPAMPDGGA VIRPDQHQHH PSSRNMLLMS QVISSSGGGG GSGRQGAAEL 360 HMRPRHGWSS GGNNWAPPYA ARPRLPGAED DDDDDSAAAA SSGFPMGQVA TASSSSRPSS 420 SSCSSRRSST AAATATTGR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST  60
EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  120
TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS  180
SRFRGVTLHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAK AYDKAAIKCC GKEAVTNFDT  240
QAYEDELNLQ SWDSELDLEL SLGCSGGERA AGEVLHSAPS NQRTSLTFML PEEEEMTACH  300
RQRSIWARPS LAPAMPDGGA VIRPDQHQHH PSSRNMLLMS QVISSSGGGG GSGRQGAAEL  360
HMRPRHGWSS GGNNWAPPYA ARPRLPGAED DDDDDSAAAA SSGFPMGQVA TASSSSRPSS  420
SSCSSRRSST AAATATTGR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242957	0.0	AK242957.1 Oryza sativa Japonica Group cDNA, clone: J090089I15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642711.1	0.0	ethylene-responsive transcription factor RAP2-7
Swissprot	A0A0N7KMH0	0.0	AP24_ORYSJ; APETALA2-like protein 4
TrEMBL	A0A0E0Q0M5	0.0	A0A0E0Q0M5_ORYRU; Uncharacterized protein
STRING	ORUFI06G23930.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11821	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	4e-87	AP2 family protein

Publications ? help Back to Top
Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]