PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G23640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 985aa MW: 97074.5 Da PI: 5.5334 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.8e-10 | 121 | 172 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge ORUFI06G23640.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69********.8*********95....258************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.50E-18 | 121 | 178 | No hit | No description |
Pfam | PF00847 | 1.1E-4 | 121 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-21 | 122 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-14 | 122 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.701 | 122 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-18 | 122 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence Send to blast |
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPAPPSSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG AGAGVGGGRG LGRGGGGGRG 360 RGGKRAPTTA VTVVAPPPPV PTPAAGAAAP TLAPASAAAH APALSVEPDA LVSPASIAPA 420 YAAPAPAPAP AALEALAPPP PAAPASLSAS GGERGCVAIA NAAVAGRGRG RGSGAKRAPT 480 AVTVGAPPPQ ARTPAAAPAK AFVSAPAPAP SSVISPVLAA SASAAAAFAP APAPAAAEVI 540 PPPPLPAAAS TAAAPAAERK RKLLTASSLS SSGGERGRGR ARGRGRVADA AIAGGSRGRG 600 RGCGLTPAVV TVGAPPPPSA APAPAPASAP SLEPNDIIAP VVSSTLAPGA SAAAAAAPAV 660 APPAAALEAI LIPMPPPAAA AAAAAPVPKK RKVRTASTLS GSGGPGRGRG RVAEATFVGR 720 GRGVWSVRGR GRGRIPTEVT VGTPSPSAPT PAPASATAPL IQSNVVISPV PPTLAASGVA 780 AWPPVPAIPE LTTAAAAPLP EKPVLTAHDV VMATLFPNGV FSYTAGSSHA PPPPVASGSF 840 FQEVIPPGGV PTNYAIHEAP DFDPNVFFAD VPDGEQDELV LLSLTSTLLD IDNSLTLVAD 900 DAASSAQAAV DVASSSAQAA IDVPSSSVLA VVDIPSSSAQ AAIDVPASLA QAATDVASSS 960 TQGAAGNERP IMFDFDLNEP ASNFE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 575 | 584 | RGRGRARGRG |
2 | 575 | 585 | RGRGRARGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005386 | 0.0 | AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881953.1 | 0.0 | calphotin | ||||
TrEMBL | A0A0E0Q0J2 | 0.0 | A0A0E0Q0J2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G23640.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13787 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 7e-12 | ERF domain protein 12 |