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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G03050.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 637aa MW: 67546.4 Da PI: 8.4527 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 306 | 365 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ ORUFI06G03050.2 306 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 365 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-32 | 291 | 365 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-27 | 299 | 366 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.311 | 301 | 367 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 306 | 366 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-27 | 307 | 365 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MAKTCRKLRT DINGGRAIRS YSGQTYAEQK EEEKELKADK NLRRRGEEMI KGERQLGTHE 60 DRLKDEVIKD GDKISDGNFF KSLQNISSTK EEVCSPGPIE RSCMDSSLLN MKAQNKGQDD 120 KLESTRAEMG EVREENERLK TLLSRISHDY RSLQTHFYDV LQQGRAKKLP DSPATDIEEP 180 EFVSLRLGTS TSKCKKEDKS TTSSEVKGST EDFLKIKGGL SLGLSDCRVD ANNSEKVQPD 240 VMTLSPEGSF EDARDDTAET TEQWPPSKML KNLRSVGAEA EDDIAPQPQV KKARVSVRAR 300 CDAPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAAGCPV RKQVQRCADD MSILITTYEG 360 THNHPLSVSA TAMASTTSAA ASMLISGSSS TSLAAYPAAA ASPALAFDAS SKPPLIGGRP 420 FFLPTAAAAA ITSTPSYPTI TLDLTSPAAA ATSSHAAFSL SNRFSHTRYP STGFTFSGSG 480 PSSAPWPGYL SYGASLSAHP TSGRGQRGGG GGGGSAPPLY QMQQKAAAAP PPPPSVITDT 540 IAKAITADPS FHTALAAAIT SYVGKKGSPP ASGGEDSKVG LKWGEHLGLG LTHSSPSTAA 600 AAAASSSSQM FLQPSLGLSG STTSASTSPV ANREQAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-20 | 306 | 366 | 17 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 7e-20 | 306 | 366 | 17 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 44 | DKNLRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643468.1 | 0.0 | probable WRKY transcription factor 72 isoform X1 | ||||
TrEMBL | A0A0E0PTH6 | 0.0 | A0A0E0PTH6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G03050.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 5e-65 | WRKY DNA-binding protein 72 |