PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G00310.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 480aa    MW: 51017 Da    PI: 5.7126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G00310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS213.79.6e-661264791374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      lv+ Ll++A+ +++gd + a+++Larl+++     sp g    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ ++
  ORUFI06G00310.1 126 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALADA 209
                      5789*************************976666676655668899999999998665554.........44333.4669999********** PP

             GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      sP+++f+ +t  qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La     +  ++pp+l++T+++sp s++  el+ t+e L++fA+elg+pf
  ORUFI06G00310.1 210 SPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAELGIPF 302
                      **********************************************5533.3578889************************************ PP

             GRAS 177 efnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      ef++lv + l++ ++   L+  p+Ea+aV+l      +         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++al++
  ORUFI06G00310.1 303 EFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGAFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLQSCAALLE 381
                      ********999986515799999**********998887........56789********************966.......5668899***** PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                      sl+a  ++  +  +kvE+++l+++++ +    g++           +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W+
  ORUFI06G00310.1 382 SLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQ 468
                      **988.5666999*************998888887......678889*********************************************** PP

             GRAS 364 drpLvsvSaWr 374
                      + +LvsvSaWr
  ORUFI06G00310.1 469 RSELVSVSAWR 479
                      **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.817100459IPR005202Transcription factor GRAS
PfamPF035143.3E-63126479IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSSPSTS LGSCSSKPPE DPPPPIAADD  60
DCDWDAVVDM HMHMLAPAPA PDSSFLRWIM DTGYADADTF PDHPSFDSDL LQLPMPMPSD  120
HPPQPLVDDL LDAARLLDAG DSTSAREILA RLNHRLPSLP SPPGHAHPPL LRAAALLRDA  180
LLPPTALPVS STPLDVPLKL AAHKALADAS PTVQFTTFTS TQAFLDALGS ARRLHLLDFD  240
VGFGAHWPPL MQELAHHWRR AAGPPPNLKV TALVSPGSSH PLELHLTNES LTRFAAELGI  300
PFEFTALVFD PLSSASPPLG LSAAPDEAVA VHLTAGSGAF SPAPAHLRVV KELRPAVVVC  360
VDHGCERGAL NLLQSCAALL ESLDAAGASP DVVSKVEQFV LRPRVERLAV GGGDKLPPPL  420
QSMLASAGFA ALQVSNAAEA QAECLLRRTA SHGFHVEKRQ AALALWWQRS ELVSVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2620347980375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.10.0scarecrow-like protein 6
TrEMBLA0A0P0WRA80.0A0A0P0WRA8_ORYSJ; Os06g0105350 protein
STRINGOS06T0105350-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-64GRAS family protein