PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G21560.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 358aa    MW: 38073.8 Da    PI: 4.4545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G21560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.32.3e-26154214259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+edp++ +itY g+H+++
  ORUFI05G21560.1 154 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKddhGCTATKQVQQSEEDPSLYVITYFGDHTCS 214
                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.138148216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-27148214IPR003657WRKY domain
SuperFamilySSF1182903.27E-25149215IPR003657WRKY domain
SMARTSM007741.0E-39153215IPR003657WRKY domain
PfamPF031064.5E-26154213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MALIATGATA TATAAPVASP AASSMASELM AQGRESAAVL EALLHGASLP PAHGGAHALA  60
AEILRCCDRA LAALRAGGDA ESSSADTKRK PATAQPSTRR RRRYIYMYVS SRSCDGARDR  120
AATQQEIFCR ATASGGGAAA AAEPARVEKA RTSEDGFLWR KYGQKEIKNS KHPRLYYRCS  180
YKDDHGCTAT KQVQQSEEDP SLYVITYFGD HTCSCQTAAA AAMDDDDDDE NSQHFVINFG  240
PATASRSGSP PLLYDDGDDG DVWRETAATP PSSRQSRCSP EGDGEESGVK MSKEEPVDSC  300
PGPSAVSSPA DVVSCSSPAM EPDLLGCLNW DDDFGDSSFV DADEFMNFDE IDLFQIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21154213968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187102KRKPATAQPSTRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447370.0AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.11e-177probable WRKY transcription factor 70
TrEMBLA0A0E0PNZ40.0A0A0E0PNZ4_ORYRU; Uncharacterized protein
TrEMBLA0A0P0WNK50.0A0A0P0WNK5_ORYSJ; Os05g0478400 protein
STRINGORUFI05G21560.10.0(Oryza rufipogon)
STRINGOS05T0478400-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-21WRKY DNA-binding protein 70