PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G08750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 308aa MW: 34549.6 Da PI: 7.0287 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62 | 1.1e-19 | 147 | 208 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 Dg++WrKYGqK++++s++ rsYYrC+++ +C+++k v++ ++ ++ + +++Y g+H+++ ORUFI05G08750.1 147 DGHQWRKYGQKNINNSNHQRSYYRCSYKheqNCKATKTVQQLDSagETIMYTVVYYGQHTCK 208 9*************************99999*********9766115567899*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-22 | 136 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-21 | 140 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-32 | 145 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.458 | 147 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-23 | 147 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKNKGSSCRY LPHSSAPCAT DGARCFRCDH RPAIDEIVRE QSLVTQLRAV VLPALETKAD 60 DGRAEIVAQL FGSILDCSRK VISALNSRYV GESPPDDDEI VDKRRAKRKN SEGKKGDDQV 120 KVKPHEHKRS RRYTNSTSQI TAVPHYDGHQ WRKYGQKNIN NSNHQRSYYR CSYKHEQNCK 180 ATKTVQQLDS AGETIMYTVV YYGQHTCKTN MSNAPLHVVE TSTTQSISTT CCSDDLGDYS 240 QKMENMHTPE LAEVCSDELG SYHAIIGAEH SALGLEDEHM HKLLDTFACG ALDLDSWEID 300 AIVRSGFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-13 | 147 | 208 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135420 | 0.0 | AC135420.4 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638919.1 | 0.0 | probable WRKY transcription factor 70 isoform X1 | ||||
TrEMBL | A0A0E0PJB0 | 0.0 | A0A0E0PJB0_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0WJL0 | 0.0 | A0A0P0WJL0_ORYSJ; Os05g0233100 protein | ||||
TrEMBL | A2Y7I3 | 0.0 | A2Y7I3_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI05G08750.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 3e-21 | WRKY DNA-binding protein 70 |