PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

ORUFI04G18750.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 930aa MW: 100958 Da PI: 6.023

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G18750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.1	8.4e-29	558	609	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI+RWP+Rki+++ ORUFI04G18750.1 558 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKV 609 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	544	629	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-26	561	609	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.05E-24	819	911	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-22	825	907	No hit	No description
PROSITE profile	PS51745	26.738	828	910	IPR000270	PB1 domain
SMART	SM00666	4.4E-22	828	910	IPR000270	PB1 domain
Pfam	PF00564	2.2E-17	829	909	IPR000270	PB1 domain
CDD	cd06407	1.05E-29	829	909	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR 60 MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD 120 DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP 180 FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH 240 ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNAVNLKAT KGSSNQKFYT 300 ENQKFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGKDGASFS QSGKTIIRIH 360 ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR 420 KFSLHAAVAI RLRSTYTGND DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY 480 EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSITG ASFEDTSLAN KPGVMEPELA 540 EQVQPSSIGH AEKKRSTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGISR 600 WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDGLPTP 660 SVGKTVEENS DLKSEEGCSL PDGSQRQSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA 720 KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRNQIVGRNS PSIQQEDLDM 780 LDNHEAEDKD HMHPSTSGMT DSSSGSASSH PTFKQNTRSA LKDAASPALT VKATYNGDTV 840 RFKFLPSMGW YHLLEEIAKR FKLPTGAFQL KYKDDEDEWV ILANDSDLQE CVDVLDSIGS 900 RIVKLQVRDL PCIVSSSGSS TCLQLAAHSS

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR  60
MFAMWPSMGS SPCAAGTSED MPLDAYSGLG EAVEEPSQIM SVNPTEAEKT GKSSGELGSD  120
DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP  180
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH  240
ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDNAVNLKAT KGSSNQKFYT  300
ENQKFAFTEI LDVLRAICHA HMLPLALTWV PTSNGIDGGY VVGKDGASFS QSGKTIIRIH  360
ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR  420
KFSLHAAVAI RLRSTYTGND DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY  480
EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSITG ASFEDTSLAN KPGVMEPELA  540
EQVQPSSIGH AEKKRSTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGISR  600
WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDGLPTP  660
SVGKTVEENS DLKSEEGCSL PDGSQRQSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA  720
KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRNQIVGRNS PSIQQEDLDM  780
LDNHEAEDKD HMHPSTSGMT DSSSGSASSH PTFKQNTRSA LKDAASPALT VKATYNGDTV  840
RFKFLPSMGW YHLLEEIAKR FKLPTGAFQL KYKDDEDEWV ILANDSDLQE CVDVLDSIGS  900
RIVKLQVRDL PCIVSSSGSS TCLQLAAHSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060753	0.0	AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
GenBank	AK103154	0.0	AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636521.1	0.0	protein NLP2
Refseq	XP_015636522.1	0.0	protein NLP2
Refseq	XP_015636523.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A0E0PB03	0.0	A0A0E0PB03_ORYRU; Uncharacterized protein
STRING	ORUFI04G18750.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-178	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]