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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G16370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 36838.7 Da PI: 7.6435 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.8 | 3e-55 | 12 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv++ ++ + +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++ ORUFI04G16370.1 12 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVAEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 104 79*************************999.67***************8888899*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkgek+ Wvmheyrl ORUFI04G16370.1 105 -RKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 137 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-64 | 7 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.414 | 12 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-30 | 13 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEQHQGQAGM DLPPGFRFHP TDEELITHYL AKKVADARFA ALAVAEADLN KCEPWDLPSL 60 AKMGEKEWYF FCLKDRKYPT GLRTNRATES GYWKATGKDK DIFRRKALVG MKKTLVFYTG 120 RAPKGEKSGW VMHEYRLHGK LHAAALGFLH GKPASSKNEW VLCRVFKKSL VEVGAAGGKK 180 AAVVTMEMAR GGSTSSSVAD EIAMSSVVLP PLMDMSGAGA GAVDPATTAH VTCFSNALEG 240 QFFNPTAVHG HGGGDSSPFM ASFTQYGQLH HGVSLVQLLE SCNGYGGLVD MAASGSQLQP 300 AACGGERERL SASQDTGLTS DVNPEISSSS GQKFDHEAAL WGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-53 | 2 | 169 | 5 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028181 | 0.0 | AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds. | |||
GenBank | AK061745 | 0.0 | AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence. | |||
GenBank | AK104626 | 0.0 | AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence. | |||
GenBank | CT830107 | 0.0 | CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence. | |||
GenBank | DQ520641 | 0.0 | DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633922.1 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_015633924.1 | 0.0 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FLR3 | 6e-96 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A0E0PA44 | 0.0 | A0A0E0PA44_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AUR1 | 0.0 | B8AUR1_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q01II7 | 0.0 | Q01II7_ORYSA; H0219H12.10 protein | ||||
TrEMBL | Q7XUV6 | 0.0 | Q7XUV6_ORYSJ; NAC domain protein | ||||
STRING | ORUFI04G16370.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS04T0460600-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 3e-83 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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