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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G14690.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 356aa MW: 39618.4 Da PI: 8.9368 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 282 | 305 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+ e Cr++++ C++ ++C+FaH+ ORUFI04G14690.4 282 YGVEVCRDYLK-NMCNR-ESCRFAHP 305 899********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.183 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.037 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.1 | 109 | 129 | No hit | No description |
PROSITE profile | PS50103 | 11.836 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 138 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 3.7 | 150 | 163 | No hit | No description |
PROSITE profile | PS50103 | 13.094 | 180 | 208 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.019 | 181 | 207 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.73 | 211 | 235 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.291 | 215 | 236 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.2 | 216 | 233 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-4 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 281 | 307 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-4 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.013 | 287 | 305 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MASAETPNPD AEIPNTDAAA AADPAAAAPA AAATDPAAAG SPSPPLPPRK RRLSPTPSPT 60 RRSSRSRSRS PRRGRSRSRS RSRSRGRSAS PRYPDGKRRR HNDLNVEVCR DFLRDRCARA 120 DIECKYAHPH PTVAVDRDSK VTACADSLRN NCFRGRTCRY YHPPPHIQES LLRSIGVEDP 180 KVKMVCRDFT RGRCSRSANE CRFLHHSPLE DCAIVCQDFL RGRCDRKSCR YSHVMAHPMP 240 PPMRDIPMQY PDMVYMPPPA PLGVPMMMPP PSAPAAFSGN NYGVEVCRDY LKNMCNRESC 300 RFAHPDLNNE FAVILSEENA IDLPVAFTIH LQAQILLDKV NIECPALLPL LPLCCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5u6h_A | 2e-14 | 104 | 171 | 14 | 79 | Muscleblind-like protein 1 |
5u9b_A | 2e-14 | 104 | 171 | 14 | 79 | Muscleblind-like protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 86 | RSRSRSRSRGR |
2 | 78 | 86 | RSRSRSRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060634 | 0.0 | AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636418.1 | 0.0 | zinc finger CCCH domain-containing protein 28 isoform X2 | ||||
Swissprot | Q0JD07 | 1e-161 | C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | A0A0E0P9I1 | 0.0 | A0A0E0P9I1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G14690.4 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10904 | 19 | 22 |
Publications ? help Back to Top | |||
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