PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G14220.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 504aa    MW: 52625.9 Da    PI: 8.3609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G14220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2392e-73864951374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lLl+++ a ++gd+++a a+L ++  +as +g  dp qR+aa+++ ALa rla    +l  a ++ +++    +e++ a+++f+++sP+++
  ORUFI04G14220.1  86 LVRLLLSAVAAGEAGDARAAAAALREVDRRASCRGggDPAQRVAACYAAALAPRLAA---GLRPARSSPAAPAAARAEQFLAYTMFYQASPFYQ 176
                      6899**************************99998789******************9...44444444444444589999************** PP

             GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeeleetgerL 165
                      f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+L++ ++                    p slRiT +g+    s++el+et+ rL
  ORUFI04G14220.1 177 FAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAAAatsssshddddngggcgdgPVSLRITCFGA----SADELRETEARL 266
                      **************9876699*********************988744455677888888999999788*********....9*********** PP

             GRAS 166 akfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnse.. 251
                      ++fA+ + +++fef+  + ++ ++ + +  r++ + +++Vnlv+   +     ++      + +  ++sl+P +v ++e+      +    +  
  ORUFI04G14220.1 267 RRFAAGCpNLRFEFEG-ILNNGSNTRHDCTRIDDDATVVVNLVFPASSRE---AC----AATRMAYINSLNPSMVFLIEKHdggggL----Tgg 348
                      ***998769*******.6999***********************655553...22....234699**************97555431....133 PP

             GRAS 252 .........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle..........kWrerleeaGFkp 326
                               s+l rf+  l+y++a+fdsl++ lp++s er  +Er  lgrei ++va    ++r rh   +          +W++++e aG+  
  ORUFI04G14220.1 349 dntttgrsaSLLPRFAANLRYFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRHGGGGgggdhaaaswNWKAAMEGAGLDG 442
                      455566777*************************************************9999999996533222222233389*********** PP

             GRAS 327 vplsekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                      v+ls+++++qaklll++ +   + g+rv e +g +   l W+d +L +++ Wr
  ORUFI04G14220.1 443 VKLSSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATLWR 495
                      ***************9977422455***9998877668**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.87160470IPR005202Transcription factor GRAS
PfamPF035146.9E-7186495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MNLKLSLAID GGGGGDAAAA VAKKSKVVGG GAVVVDGVGS SAICGGDRGS RVRDRMVKKA  60
EEFDHENGMA ATSSDGGGGG GGGMELVRLL LSAVAAGEAG DARAAAAALR EVDRRASCRG  120
GGDPAQRVAA CYAAALAPRL AAGLRPARSS PAAPAAARAE QFLAYTMFYQ ASPFYQFAHF  180
TANQAIVEAF ESGGRRRLHV VDFDVSYGFQ WPSLIQSLSD AAAAATSSSS HDDDDNGGGC  240
GDGPVSLRIT CFGASADELR ETEARLRRFA AGCPNLRFEF EGILNNGSNT RHDCTRIDDD  300
ATVVVNLVFP ASSREACAAT RMAYINSLNP SMVFLIEKHD GGGGLTGGDN TTTGRSASLL  360
PRFAANLRYF AAVFDSLHEC LPADSAERLA IERDHLGREI ADAVASLDHQ HRRRHGGGGG  420
GGDHAAASWN WKAAMEGAGL DGVKLSSRTV SQAKLLLKMK SGCGGGGFRV VEGDGGMAMS  480
LAWRDMALAT ATLWRRRRRR RRCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-349649728380Protein SCARECROW
5b3h_D8e-349649728380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494501RRRRRRRR
2495501RRRRRRR
3496503RRRRRRCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064580.0AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634839.10.0protein MONOCULM 1
TrEMBLA0A0E0P9C00.0A0A0E0P9C0_ORYRU; Uncharacterized protein
STRINGORUFI04G14220.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-29GRAS family protein