PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI04G09620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 390aa MW: 43326.9 Da PI: 5.7511 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.2 | 2.4e-15 | 173 | 222 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l Wtp L ++F++a++ L G++ A Pk+i+++m+v+ + +++ HLQk+Rl ORUFI04G09620.1 173 LMWTPHLQKKFLHALQIL-GKD-ASPKNIKKIMGVDNIDCRQIAAHLQKHRL 222 78****************.665.****************************8 PP | |||||||
2 | Response_reg | 53 | 2e-18 | 15 | 123 | 2 | 108 |
EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 +++d+++ ++ +l+ + ++ +v++++++ +al+ l+++ +Dl+l D+ m +m+G+++lk re ++++++i+++++ ++ ++++++k+ ORUFI04G09620.1 15 MVIDEDKCHADSTSYMLSaELNF-SVTVFTSPIKALDFLQNHAegVDLVLADVHMEEMNGFDFLKVARELHKSIQVIMMSTETTMYTMKRCVKL 107 899***************9999*.******************999************************************************* PP TESEEEESS--HHHHH CS Response_reg 93 GakdflsKpfdpeelv 108 Ga+ + Kp d + ORUFI04G09620.1 108 GAQFLVNKPLDAGTIK 123 *********9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.27E-23 | 11 | 129 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.7E-23 | 12 | 129 | No hit | No description |
SMART | SM00448 | 3.2E-11 | 12 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 27.118 | 13 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.68E-16 | 15 | 119 | No hit | No description |
Pfam | PF00072 | 9.3E-17 | 15 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF46689 | 1.97E-12 | 167 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-15 | 168 | 225 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-15 | 173 | 223 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MAQKEGLPAG RLSAMVIDED KCHADSTSYM LSAELNFSVT VFTSPIKALD FLQNHAEGVD 60 LVLADVHMEE MNGFDFLKVA RELHKSIQVI MMSTETTMYT MKRCVKLGAQ FLVNKPLDAG 120 TIKNLWQYVD LKVLRMEKIK DLLQGIGDES TCANETNSLA ENPKNDTKKK YYLMWTPHLQ 180 KKFLHALQIL GKDASPKNIK KIMGVDNIDC RQIAAHLQKH RLRLTKDLKK ASFTTDTSKD 240 ESNSRIGPAE SHHVCRNAST LQPRSNTQPT ETTMQILSED AEYDDVYAAM RRALQYGIVF 300 DESKHSSDPS GDEDEQVVVG GDQDGCANEA NDIDSSGDHH QVAAVVTKPC NANASQEIIN 360 KMTNSDGMQA TKGSKAAVFR LVDYSESDSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662963 | 0.0 | AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880730.1 | 0.0 | two-component response regulator ORR29 | ||||
Swissprot | Q7XS69 | 0.0 | ORR29_ORYSJ; Two-component response regulator ORR29 | ||||
TrEMBL | A0A0D3FUG7 | 0.0 | A0A0D3FUG7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0P7N6 | 0.0 | A0A0E0P7N6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G09620.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OBART04G08380.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01760.1 | 3e-22 | response regulator 14 |