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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G41610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 38297 Da PI: 4.4502 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.5 | 3.6e-12 | 6 | 144 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy.. 82 +G+ F+P+d++l + yL+ + +++ +++ ++ +d+y++ P +L + + +++ + wy F++ + ++g rk r++ g ORUFI03G41610.1 6 KGLVFSPSDDQLTDGYLRSYLVRTSlddlpSAATSYFHVADVYSAPPDQLVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGGGCge 99 6999***************998888667643333459999**********7456776654455778********************99977666 PP NAM 83 .WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127 W+a g k+v+ +++ g + + + k +k W+m e++ ORUFI03G41610.1 100 cWHAEGGPKDVKG--SAAGGKLQKFSYKiKTALGAVVKPGWLMVEFS 144 7**********87..666677777888733344555799******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-22 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.218 | 4 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-8 | 7 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAEIGKGLVF SPSDDQLTDG YLRSYLVRTS LDDLPSAATS YFHVADVYSA PPDQLVAGLA 60 PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGGGCGEC WHAEGGPKDV KGSAAGGKLQ 120 KFSYKIKTAL GAVVKPGWLM VEFSFPGSDH LALCKVYRSP RTSRYGAPSP PSSAASSPSR 180 AAPPPVSSTS GRKRKAEEES DHPEAPASSA PRRTLPASEQ HVDVDAAAAS EPDQGGYLST 240 DQLDSVAAFV QEHEAFVQEH EGDEEFCKSL GFDERSDPQC WTNFFLSALE EFGPAPETDA 300 AAVAVAAVEP GPCPEYEEHD DTATTAASSH AYDSATAELV NLSDKEFYDI IFSGDQQGGA 360 AVAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133339 | 0.0 | AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence. | |||
GenBank | AC133778 | 0.0 | AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0P3H7 | 0.0 | A0A0E0P3H7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XNP4 | 0.0 | A2XNP4_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q851A4 | 0.0 | Q851A4_ORYSJ; Os03g0832000 protein | ||||
STRING | ORUFI03G41610.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6280 | 15 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-09 | NAC domain containing protein 90 |