PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G40640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 434aa MW: 47262.8 Da PI: 7.9709 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 117 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g ORUFI03G40640.1 117 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 166 78*******************......55************************998 PP | |||||||
2 | AP2 | 42 | 2.3e-13 | 209 | 259 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g ORUFI03G40640.1 209 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 259 79********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-11 | 117 | 176 | No hit | No description |
Pfam | PF00847 | 1.9E-9 | 117 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-16 | 117 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.622 | 118 | 174 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-17 | 118 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-31 | 118 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-26 | 209 | 269 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-16 | 209 | 267 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-8 | 209 | 259 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.041 | 210 | 267 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-16 | 210 | 267 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-33 | 210 | 273 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-6 | 211 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-6 | 249 | 269 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MLLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGLFR FDLLASSPDD DECSGEQHQL 60 PAASGIVTRQ LLPPPPPAAP SPAPAWQPPR RAAEDAALAQ RPVVAKKTRR GPRSRSSQYR 120 GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGLEAD INFNLSDYED 180 DLKQMRNWSK EEFVHILRRQ STGFARGSSK FRGVTLHKCG RWEARMGQLL GKKYIYLGLF 240 DTEVEAARAY DRAAIRFNGR EAVTNFEPAS YNVDALPDAG NEAIVDGDLD LDLRISQPNA 300 RDSKSDVATT GLQLTCDSPE SSNITVHQPM GSSPQWTVHH QSTPLPPQHQ RLYPSHCLGF 360 LPNLQERPMD RRPELGPMPF PTQAWQMQAP SHLPLLHAAA SSGFSAGAGA GVAAATRRQP 420 PFPADHPFYF PPTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685113 | 0.0 | AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628369.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | Q84TB5 | 0.0 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A0E0P349 | 0.0 | A0A0E0P349_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G40640.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-90 | related to AP2.7 |
Publications ? help Back to Top | |||
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