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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G36320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 814aa MW: 88045.4 Da PI: 7.2628 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.9 | 2e-28 | 569 | 625 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+ k++e prsYY+Ct gCpvkk vers+ d+ + eitY+g+H h+ ORUFI03G36320.1 569 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 625 8****************************************.***************7 PP | |||||||
2 | WRKY | 102.2 | 3e-32 | 714 | 772 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg++ prsYY+Ct gC+v+k++er++ dpk+v +tY+g+Hnh+ ORUFI03G36320.1 714 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 772 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.128.20 | 1.4E-13 | 1 | 98 | IPR012674 | Calycin |
SuperFamily | SSF50814 | 4.87E-5 | 36 | 98 | IPR011038 | Calycin-like |
Pfam | PF12204 | 6.4E-13 | 69 | 250 | IPR022017 | Domain of unknown function DUF3598 |
SuperFamily | SSF50814 | 2.39E-30 | 113 | 255 | IPR011038 | Calycin-like |
Gene3D | G3DSA:2.40.128.20 | 5.4E-43 | 114 | 255 | IPR012674 | Calycin |
PROSITE profile | PS50811 | 22.768 | 563 | 627 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-26 | 564 | 627 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-23 | 567 | 627 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-31 | 568 | 626 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-21 | 569 | 625 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-34 | 699 | 774 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 706 | 774 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.059 | 709 | 774 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-36 | 714 | 773 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-24 | 715 | 772 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MFTVDKYQQV GFFQEEKAFA LRYQTAGMLE TVLRAGVLGE DDTGEESPKN LKIPSRKPSI 60 VCENCLYSRE GNGRVRAFHI MDPKGVLDML IIFHEKQGSE VPLMYSSDDA DITNSDRIAP 120 LLGRWEGRSV TKRSGVYGAT LSEADTVVLL EKDRNGQLIL DNMSTKSGSS TTTTVHWTGS 180 ANNNLLQFDG GYEMTLLPGG MYMGYPTDIG KIVNDMDSFH LEFCWMESPG KRQRLVRTYD 240 SAGLAVSSTY FFETKRLSSL KPHHHLRRRV GDHGRTPDLS NANRVAGEGE GGDRFRRRRV 300 AAVTAAAIDR AKSPEEGDSF RWFWKYSAQA VGASQSNPNT SRSDPLSWSA AVVVIDREAL 360 PLHKQRKLTR AAAVAMADRR RSDGGGGMQQ QPFTSPGQER VFDGGGVPGQ VAAPYGSDFD 420 QSSYMALLAA GAVGVGVGVQ PTAAPWAVEE DVAAAPPGIS LAPQFSMANY APPPSYQHPA 480 TLVSPPLAAG LHPYPPYLHG VDAPPPQWPP RPAPPPSFSV LDLAAAAAPH EQRHSMQQLL 540 LRAAAFGGGM HAAAAPAPAA AAAIEQPAKD GYNWRKYGQK QLKDAESPRS YYKCTRDGCP 600 VKKIVERSSD GCIKEITYKG RHSHPRPVEP RRGGAASSSS SAMAAGTDHN AGAAADDAAA 660 ADEDDPSDDD DTLLHEDDDD GEEGHDRGVD GEVGQRVVRK PKIILQTRSE VDLLDDGYRW 720 RKYGQKVVKG NPRPRSYYKC TADGCNVRKQ IERASADPKC VLTTYTGRHN HDPPGRPPAA 780 ANLQMPGPAA MRLAGGGTAH QQPSGGAHQM KEET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yvf_A | 1e-117 | 1 | 255 | 103 | 356 | BFA1 |
5yvf_B | 1e-117 | 1 | 255 | 103 | 356 | BFA1 |
5yvf_C | 1e-117 | 1 | 255 | 103 | 356 | BFA1 |
5yvf_D | 1e-117 | 1 | 255 | 103 | 356 | BFA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341852 | 0.0 | AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630965.1 | 0.0 | probable WRKY transcription factor 58 | ||||
TrEMBL | Q7XAA5 | 0.0 | Q7XAA5_ORYSJ; Os03g0758900 protein | ||||
STRING | ORUFI03G36320.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2875 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-35 | WRKY DNA-binding protein 4 |