PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G31840.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 364aa    MW: 39753.5 Da    PI: 10.1477
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G31840.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.96.9e-33254310158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh+hA+rR+Rg+gGrF
  ORUFI03G31840.4 254 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKSRKPYLHESRHQHAMRRARGTGGRF 310
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-37252313IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.398253313IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-28255310IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-24256278IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860258278IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-24287310IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDPPVHAAEL NHRNNYGPLS SPNPISLRIR ARLSLARARE PVAAAAASSS SSEEPEPQRR  60
RAPPPIGRPL GEREREREID RSSPIGRRLR ALAAHWPGGT NLVEPRGQGA LPSGIPIQQP  120
WWTTSAGVGA VSPAVVAPGS GAGISLSGRD GGGDDAAEES SDDSRRSGET KDGSTGQEKH  180
HATSQMTALA SDYLTPFSQL ELNQPIASAA YQYPDSYYMG MVGPYGPQAM SAQTHFQLPG  240
LTHSRMPLPL EISEEPVYVN AKQYHGILRR RQSRAKAELE KKVVKSRKPY LHESRHQHAM  300
RRARGTGGRF LNTKKNEDGA PSEKAEPNKG VFPFLMNSFV YPKGEQNSGY RRIPPDLQLL  360
QKET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20254317265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880300.0AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0698540.0AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632634.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632635.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632636.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632637.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A0E0NZY40.0A0A0E0NZY4_ORYRU; Uncharacterized protein
STRINGORUFI03G31840.40.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-39nuclear factor Y, subunit A9