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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G31840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 298aa MW: 32426.3 Da PI: 9.345 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.4 | 5e-33 | 188 | 244 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ ksrkpylheSRh+hA+rR+Rg+gGrF ORUFI03G31840.1 188 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKSRKPYLHESRHQHAMRRARGTGGRF 244 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.5E-37 | 186 | 247 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.398 | 187 | 247 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.4E-29 | 189 | 244 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.4E-25 | 190 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 192 | 212 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.4E-25 | 221 | 244 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDQFLVGPGV IVGGFKWFML VSSSEHSESR PGGTNLVEPR GQGALPSGIP IQQPWWTTSA 60 GVGAVSPAVV APGSGAGISL SGRDGGGDDA AEESSDDSRR SGETKDGSTG QEKHHATSQM 120 TALASDYLTP FSQLELNQPI ASAAYQYPDS YYMGMVGPYG PQAMSAQTHF QLPGLTHSRM 180 PLPLEISEEP VYVNAKQYHG ILRRRQSRAK AELEKKVVKS RKPYLHESRH QHAMRRARGT 240 GGRFLNTKKN EDGAPSEKAE PNKGVFPFLM NSFVYPKGEQ NSGYRRIPPD LQLLQKET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 188 | 251 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288030 | 0.0 | AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK069854 | 0.0 | AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence. | |||
GenBank | EU847012 | 0.0 | EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632634.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632635.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632636.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_015632637.1 | 0.0 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
TrEMBL | A0A0E0NZY1 | 0.0 | A0A0E0NZY1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G31840.4 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 5e-40 | nuclear factor Y, subunit A9 |