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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G30870.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 736aa MW: 78703.2 Da PI: 6.13 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.8 | 7.9e-08 | 674 | 706 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +e+ LA +gL+ +q+++WF N R + ORUFI03G30870.2 674 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 706 89*****************************88 PP | |||||||
2 | BELL | 56.7 | 6.1e-19 | 532 | 594 | 10 | 72 |
BELL 10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 akLlsll e++ r+++y +l+ v +sFe + g g+ + Yt+l +a+S hF +L+ ai ++ ORUFI03G30870.2 532 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSHHFGSLRRAILRKL 594 8**********************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.9E-16 | 472 | 592 | IPR006563 | POX domain |
Pfam | PF07526 | 4.8E-20 | 478 | 590 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.175 | 647 | 710 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-10 | 650 | 711 | No hit | No description |
SMART | SM00389 | 5.4E-9 | 650 | 714 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 655 | 716 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.92E-16 | 656 | 718 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-16 | 667 | 706 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF 60 MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND 120 THSSAQIEFG LLNNHNSMSV APAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYHGDD 180 NRMKNMQSEA SQAIRNSNSM SQTYQPSQLG ESKANIGMMS LGGAPAGFHN EGNQDDSFMN 240 LMLKDQRPGE AEGSLLHDAV AHHSDENARF MAYHLSGLGR YGNSNVSLTL GLQHPDNRLS 300 VQNTHQPGFA GAGEEIYNST ASLGVAAASS SDYESTNQID QRQRSSCRIE AAVWLPQAQG 360 LGSCIFFVRV NAPCCCHVGP GTMASLWVRL TMVASKQLHS QRCGGHYCQL HHHRLEEIAG 420 AGAESHRRDG SSGCGGAGPM VVLTLGSGAA AAEDDGGGRS RCCCGAGGAA PATMVSALRG 480 SRYLLPAQEL LREAVSAAAA SARGGDDDDE AVASFPHDGK STGIGGGGGV QAKLLSLLSE 540 LESRHEHYFG ELRRVSASFE PALGAGATAG YTALMAQAMS HHFGSLRRAI LRKLRLHAAA 600 AARTRSALLR LARDAMEEDD EGDGEEEEEV VNRVVRRTKQ AAAARAEQAW RPLRGLPEDA 660 VGVLRAWLFD HFLHPYPNDN EKLMLAVATG LSRTQISNWF INARVRLWKP MVEEMYNDEF 720 DDDDAGSGGG GASSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 4e-16 | 656 | 714 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-16 | 656 | 714 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 3e-16 | 656 | 714 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-16 | 656 | 714 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060746 | 0.0 | AK060746.1 Oryza sativa Japonica Group cDNA clone:001-032-E12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0NZK6 | 0.0 | A0A0E0NZK6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G30870.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 6e-34 | BEL1-like homeodomain 11 |