PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI03G23130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 603aa MW: 64215.8 Da PI: 6.3708 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 300.5 | 4e-92 | 189 | 602 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 +lL+ecA+av+ +d +++q+l++ l+elasp+gd q+la+yf+++L arl+ s++++ ++l++ ++++ s +++ + l f+e+sP+ f+ ORUFI03G23130.1 189 AQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNA-SFDSTRRTALkFQELSPWTPFG 281 589************************************************************99988744.44444444446*********** PP GRAS 95 hltaNqaIleavege...................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerL 165 h++aN aIle++ ++ +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++ ++ ++e+g+rL ORUFI03G23130.1 282 HVAANGAILESFLEAaaagaaaasssssssstppTRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREIGQRL 375 **********986655666677777888888888899************************8889********996655788999********* PP GRAS 166 akfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.... 251 +kfA+ +gvpf+f+++++ +l+dl+l +L++++ alaVn+v +l + rd+++ +++l+P+vv+vve+ead+ ++ ORUFI03G23130.1 376 EKFARLMGVPFSFRAVHHAgDLADLDLAALDLREggaTAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLAAPeada 462 ***************97767**************8877899********9998.......5589********************9997767899 PP GRAS 252 ........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 F++ f e l+++sa +dsle+++p++s+er ++Er+ +gr+iv++v+c +++ er+et+++W +r+++aGF+p+++se++a+++ ORUFI03G23130.1 463 sseadtdaAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERA-VGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDV 555 99999999*************************************.************************************************ PP GRAS 338 klllrkvksdgyrveee...........sgslvlgWkdrpLvsvSaWr 374 ++llr++k +g+++ + + ++l Wk++p+v++SaW+ ORUFI03G23130.1 556 RSLLRRYK-EGWSMRDAggatddaagaaAAGAFLAWKEQPVVWASAWK 602 ********.888988555556667777688899**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.864 | 162 | 572 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-89 | 189 | 602 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MDTLFRLVSL HHHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH TYYHHSHSHY 60 NNNSNTNYYY QGGGGGGGGY YYAEEQQPAA YLEECGNGHQ FYMDEDFSSS SSSRQFHSGT 120 GAPSSAPVPP PPSATTSSAG GHGLFEAADF SFPQVDISLD FGGSPAVPSS SGAGAGAGAA 180 PSSSGRWAAQ LLMECARAVA GRDSQRVQQL MWMLNELASP YGDVDQKLAS YFLQGLFARL 240 TTSGPRTLRT LATASDRNAS FDSTRRTALK FQELSPWTPF GHVAANGAIL ESFLEAAAAG 300 AAAASSSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP 360 SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHAGDLADL DLAALDLREG GATAALAVNC 420 VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DASSEADTDA AFVKVFGEGL 480 RFFSAYMDSL EESFPKTSNE RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA 540 GFSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAGAFLAW KEQPVVWASA 600 WKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-159 | 137 | 603 | 4 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-159 | 137 | 603 | 4 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629293.1 | 0.0 | protein SHORT-ROOT 2 | ||||
Swissprot | A2XIA8 | 0.0 | SHR2_ORYSI; Protein SHORT-ROOT 2 | ||||
TrEMBL | A0A0E0GPE2 | 0.0 | A0A0E0GPE2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NWY0 | 0.0 | A0A0E0NWY0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G23130.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA03G24000.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3526 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-132 | GRAS family protein |