PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G19470.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 376aa    MW: 39867.4 Da    PI: 6.1877
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G19470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.84.6e-3581180297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+
  ORUFI03G19470.1  81 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 174
                      79*************************9977778***************************************999****************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  ORUFI03G19470.1 175 ARGIWR 180
                      *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-3082179IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLPTVVDDPS AAAAAAVGAA ASSSFPDADV YGNGDSDDID FPSDPNHATT QAFSSAAAAA  60
AAGPGGGGGA GSGSGGERRP LFQRLWTEED EIVILRAFAE FTAQRGTAFA SHQYDTDPFY  120
EDMRRRLQLD FSKSQLVEKL RRLKRKYRNC VDRLRATGQS FSFRSPHEQA IFEIARGIWR  180
PTSDKHGRDA DSDDDALPDA AAAVAVPAPA NGEVRSPSST RAQQRRGRRR RTAAAAAATA  240
TAADASEPPQ PYPPAPAPAP VKAEDALPHF FPQGAAVTAT AHVHGVDPAS AAASAAANAE  300
GGILAPLFKE MVRAMLTAGM APPSLEPPAP GIPMKGERWR QQRILELEVY LRRIDLLQDQ  360
VRTALEELKS TPPATQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAK2432080.0AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCT8377480.0CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.10.0probable transcription factor At3g04930
TrEMBLA0A0E0NVK70.0A0A0E0NVK7_ORYRU; Uncharacterized protein
STRINGORUFI03G19470.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-33DNA-binding storekeeper protein-related transcriptional regulator