PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G06510.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1035aa    MW: 116192 Da    PI: 5.8541
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G06510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.73e-55201363118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq
  ORUFI03G06510.2  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113
                      55599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Lee++ +ivlvhylevk
  ORUFI03G06510.2 114 RRSYWMLEEDYMHIVLVHYLEVK 136
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.60615141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.2E-7446531IPR013783Immunoglobulin-like fold
PfamPF018335.6E-8448523IPR002909IPT domain
CDDcd001020.00346448535No hitNo description
SuperFamilySSF812961.57E-17448533IPR014756Immunoglobulin E-set
SuperFamilySSF484038.86E-17637741IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.8E-18639745IPR020683Ankyrin repeat-containing domain
CDDcd002042.21E-13644738No hitNo description
PROSITE profilePS500888.763646678IPR002110Ankyrin repeat
PROSITE profilePS5029718.059646750IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013679708IPR002110Ankyrin repeat
PROSITE profilePS500888.843679711IPR002110Ankyrin repeat
SMARTSM002481400718747IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8850903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407853882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034854873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578876900IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKLKFH FLHIYGYDHQ AGKLSSRSTG HDDVLQASHA DSPLSQLPSQ  180
TTEGESSVSG QASEYDETES AYLKQNSVQQ IFIREEPDTT LSLGCGSMKM EVDLYQGLQA  240
TAPNTGFYSH GQDNLPVVLN ESDLGTAFNG PNSQFDLSLW IEAMKPDKGT HQIPLYQAPV  300
PSEQSPFTGG PGIESFTFDE VYNNGLSIKD VDGDDTDGET PWQIPNASGT FATADSFQQN  360
DKTLEEAINY PLLKTQSSSL SDIIKDSFKK NDSFTRWMSK ELAEVDDSQI TSSSGVYWNS  420
EEADNIIEAS SSDQYTLGPV LAQDQLFTIV DFSPTWTYAG SKTRVFIKGN FLSSDEVKRL  480
KWSCMFGEFE VPAEIIADDT LVCHSPSHKP GRVPFYVTCS NRLACSEVRE FDFRPQYMDA  540
PSPLGSTNKI YLQKRLDKLL SVEQDEIQTT LSNPTKEIID LSKKISSLMM NNDDWSELLK  600
LADDNEPATD DKQDQFLQNR IKEKLHIWLL HKVGDGGKGP SMLDEEGQGV LHLAAALGYD  660
WAIRPTIAAG VNINFRDAHG WTALHWAAFC GRERTVVALI ALGAAPGAVT DPTPSFPSGS  720
TPADLASANG HKGISGFLAE SSLTSHLQTL NLKEAMRSSA GEISGLPGIV NVADRSASPL  780
AVEGHQTGSM GDSLGAVRNA AQAAARIYQV FRMQSFQRKQ AVQYEDENGA ISDERAMSLL  840
SAKPSKPAQL DPLHAAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKII  900
WSVGIVEKVI LRWRRRGAGL RGFRPTENAV TESTSSSSGN VTQNRPAEND YDFLQEGRKQ  960
TEERLQKALA RVKSMVQYPD ARDQYQRILT VVTKMQESQA MQEKMLEEST EMDEGLLMSE  1020
FKELWDDDMP TPGYF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631248.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0NQU60.0A0A0E0NQU6_ORYRU; Uncharacterized protein
STRINGORUFI03G06510.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1