PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G36020.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 290aa MW: 31547.3 Da PI: 10.9158

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G36020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	50	9.9e-16	157	192	1	37
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 d p+YVN+KQy++Il+RRq Rakle+++kl k+rk ORUFI02G36020.1 157 DGPIYVNPKQYHGILRRRQLRAKLEAQNKL-VKTRKT 192 57****************************.888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.1E-10	155	215	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	17.085	156	216	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-12	159	192	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MERHEEASLG TRRRIKEHPP VGMMQSRGAA AEATAGRSRG GCRRSEQQQL LRAAEAPREE 60 ARGSHASPLI VFLFLRLQRR TVDGPMRSTL TFDNNHSVVP SQNIDYGQPM ACISYPYNDS 120 GSGVWASYSS RSVFHPQIVG GGTSPRVPLP SLEIADDGPI YVNPKQYHGI LRRRQLRAKL 180 EAQNKLVKTR KTTTDSQNSS GSVHLRLGGG AIGDQTPFPF KAMDSQANIK RAAASASTFT 240 VTSAAQKDDA FFDRHGHHLS SFSGHFGQAS AQGGVGSMHN GSQQRVPAMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318574	0.0	AK318574.1 Oryza sativa Japonica Group cDNA, clone: J090045B17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623432.1	1e-145	nuclear transcription factor Y subunit A-4
TrEMBL	A0A0E0NLM5	0.0	A0A0E0NLM5_ORYRU; Uncharacterized protein
STRING	ORUFI02G36020.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13276	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.2	1e-15	nuclear factor Y, subunit A3