PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G35580.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 672aa    MW: 70383.5 Da    PI: 4.7829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G35580.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.82.9e-30402461159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  ORUFI02G35580.2 402 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 461
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31387463IPR003657WRKY domain
SuperFamilySSF1182903.79E-27395463IPR003657WRKY domain
PROSITE profilePS5081128.529397463IPR003657WRKY domain
SMARTSM007741.4E-37402462IPR003657WRKY domain
PfamPF031061.3E-26403461IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MTWDNRIKEE SSLLIALLIR LRHPDIDLNA SGEVALGFKT VPHFSCTKRD KGTQDNQKEA  60
RSMSSKKKRA AIDLSLEAER RRPEEGGGGS DREASDGAAA AAEEDGDVKQ REGPKEETGG  120
EEEKVVEVVV DQGEDGSNEE IKYRTQQAEM IEEDKQPAAA ANVDDDGGDS DGVGASAEEK  180
HMVTEATGGE GDDGGDSRTP MAQDELSEMQ EEMERMKEEN RMLRRVVDKT VRDYYELQMK  240
LAAYQQQPAA ADEPKETEVF LSLGATAAAS AGCGGGFPEA KSKEQAAWRR RSVGSDDSDG  300
GKEDLGLSLS LGASSSYDDD QKAVEARPHD VDGAAAAAMI GGDGSRPAPR GYALLESSKV  360
QGGAAPAAGE LAAAGGITSQ SVNPANRKTR VSVRVRCQGP TMNDGCQWRK YGQKVAKGNP  420
CPRAYYRCTV APGCPVRKQV QRCLEDMSIL VTTYEGTHNH PLPVGATAMA STTSAAATFM  480
LLSSTTSSSS VSDASAAPSS SYLSPYLLNS ASPLLMPGAT GGGGGMQHLN LFGNSPSSSS  540
LLAPQAPGSS KYPWSPNHPP LAGAGGNKRP FWSAGGDGDK PAPAALAENV GAVMSDPNKF  600
SAAIAAAINN FMGKDGESSS GKSSSKWGVV ESLPPHDFCV DAVHGLHRDP GFRPGSRPPE  660
EGAGAWTGST QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22389465176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0040800.0AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623937.20.0probable WRKY transcription factor 47
TrEMBLA0A0E0NLG90.0A0A0E0NLG9_ORYRU; Uncharacterized protein
STRINGORGLA02G0294600.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-49WRKY DNA-binding protein 9