PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G32550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 186aa MW: 19719.2 Da PI: 9.219 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 136.1 | 1e-42 | 29 | 122 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +++++lP+an++r+mkkvlP++aki+ +ak+++++c++ef++fv++eas+k+++e+r+t++++d+l ++++lGf++yv+p+++y++ yre+e++ ORUFI02G32550.1 29 ATNAELPMANLVRLMKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFERA 122 68999**************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-25 | 29 | 122 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-13 | 32 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.05E-23 | 33 | 152 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAGNKKRGGR NMDQVKKAAV RSDGVGGSAT NAELPMANLV RLMKKVLPGK AKIGGAAKGL 60 THDCAVEFVG FVGDEASEKA KAEHRRTVAP EDYLGSFGDL GFDRYVDPMD AYIHGYREFE 120 RAGGNRRVAP PPPAAATPLT PGGPTFTDAE LQFLRSVIPS RSDDEYSGSS PAIGGYGYGY 180 GYGKNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-24 | 34 | 118 | 13 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ300218 | 0.0 | AJ300218.1 Oryza sativa nf-yb1 gene and nf-YB1 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624776.1 | 1e-133 | nuclear transcription factor Y subunit B-1 | ||||
Swissprot | Q6Z348 | 1e-134 | NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | A0A0E0NKD3 | 1e-132 | A0A0E0NKD3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G32550.1 | 1e-133 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13659 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 7e-22 | nuclear factor Y, subunit B4 |