PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G28330.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 715aa    MW: 74185 Da    PI: 6.3129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G28330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.61.2e-863577143374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f+++
  ORUFI02G28330.1 357 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFANF 445
                      7899*************************************************6666553.....444456889******************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   
  ORUFI02G28330.1 446 TATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV--- 536
                      ************98899**********************99976544599****************************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + 
  ORUFI02G28330.1 537 SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GI 622
                      9*********888889********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l+++++ ++v  +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  ORUFI02G28330.1 623 DADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 711
                      99*******************988876.....56889********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  ORUFI02G28330.1 712 SWR 714
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.3329694IPR005202Transcription factor GRAS
PfamPF035144.1E-84357714IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPRNSTSTLS  60
SSQGGGGADS TGVAAVSESS AAAAEATKWG APGEHGGGGG GGGGGGKEDW SSGCELPPIP  120
GTLDVGLVGG EGWDTMLGNA AAAAAGQDQS FLNWIIGAAG DLEQPGPPLL DNAGFGIPAV  180
DPLGFSLDHS LSGVASDLSS SGAHTATGGA GGGKASLGFG LFSPEATSLE QPPPPMLFHE  240
GIDTKPPLLG AQPPGLLNHY HHQPPNPAAT FFMPHPSFPE HNHQSPLLQP PPKRHHSMPD  300
DIYLARNQLP PAAAAAQGLP FSPLHASVPF QLQPSPPPIR GAMKTTAAEA AQQQLLDELA  360
AAAKATEAGN SVGAREILAR LNQQLPPLGK PFLRSASYLR EALLLALADS HHGVSSVTTP  420
LDVALKLAAY KSFSDLSPVL QFANFTATQA LLDEIGGTAT SCIHVIDFDL GVGGQWASFL  480
QELAHRRAAG GVTLPLLKLT AFVSTASHHP LELHLTQDNL SQFAADLGIP FEFNAVSLDA  540
FNPGELISST GDEVVAVSLP VGCSARAPPL PAILRLVKQL SPKIVVAIDH GADRADLSFS  600
QHFLNCFQSC VFLLDSLDAA GIDADSACKI ERFLIQPRVH DMVLGRHKVH KAIAWRSVFA  660
AAGFKPVPPS NLAEAQADCL LKRVQVRGFH VEKRGAALTL YWQRGELVSI SSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2543071480375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010350.0AK101035.1 Oryza sativa Japonica Group cDNA clone:J023150P14, full insert sequence.
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLA0A0E0NIU20.0A0A0E0NIU2_ORYRU; Uncharacterized protein
STRINGORUFI02G28330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-93GRAS family protein