PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G28320.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 706aa    MW: 74003 Da    PI: 5.9185
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G28320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.63.7e-853487053374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f+++
  ORUFI02G28320.1 348 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTNF 436
                      7899*************************************************..444444555555...499********************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T++ s +s++  el+ t+++L++fA+el++pfefn++   
  ORUFI02G28320.1 437 TATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRIPFEFNAV--- 527
                      ***********998899************************966444489****************************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl++++ ++ l+dsl+a  + 
  ORUFI02G28320.1 528 SLDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GI 613
                      99*****999777779********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ls+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  ORUFI02G28320.1 614 DADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQLSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 702
                      99*******************999888.....78899********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  ORUFI02G28320.1 703 SWR 705
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.744320685IPR005202Transcription factor GRAS
PfamPF035141.3E-82348705IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MRAALFGAER SGVVDGDKEE LFWPAGKGGL VVVEPRSVLD CTRSLSPPYS TSTLSSSLGG  60
GSADSTGVAA VSESSTAAAG ATKWGAPGEH GGGGKEEWGG GCELPPIPGA LDVGLVGGEG  120
WDATATLGNA AGPDQSFLNW IIGAAGDLEQ PGPPLPVLQQ PLIDNAGFGI PAVDTMGFSL  180
DHPLSGVASD LSSSGAHTAT GGGGKASLGF GLFSPEATSL EQPPPSMLFH EGIDTKPPLL  240
GAQPQFLLNH YQPQPPNPAA ALFMPLPPFP EHNHQSPHLQ PSLKRHHAIP DDLYLARNQQ  300
QSSAVAPGLA YSPPLHGPAP FQLHPSPPPI RGAMKSTAAE AAQQQLLDEL AAAAKATEAG  360
NSVGAREILA RLNQQLPQLG KPFLRSASYL KEALLLALAD SHHGSSGVTS PLDVALKLAA  420
YKSFSDLSPV LQFTNFTATQ ALLDEIGGMA TSCIHVIDFD LGVGGQWASF LQELAHRRGA  480
GGMALPLLKL TAFMSTASHH PLELHLTQDN LSQFAAELRI PFEFNAVSLD AFNPAELISS  540
SGDEVVAVSL PVGCSARAPP LPAILRLVKQ LCPKVVVAID HGGDRADLPF SQHFLNCFQS  600
CVFLLDSLDA AGIDADSACK IERFLIQPRV EDAVIGRHKA QKAIAWRSVF AATGFKPVQL  660
SNLAEAQADC LLKRVQVRGF HVEKRGAALT LYWQRGELVS ISSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-233467054375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKEEWGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040370.0AP004037.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1001_D02.
GenBankAP0048830.0AP004883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0516F12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627415.10.0scarecrow-like protein 6
TrEMBLA0A0E0NIU10.0A0A0E0NIU1_ORYRU; Uncharacterized protein
STRINGORUFI02G28320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-93GRAS family protein