PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G18290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 24019.9 Da PI: 8.6427 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.2e-12 | 87 | 128 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ ORUFI02G18290.1 87 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 128 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.269 | 62 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-6 | 86 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-8 | 86 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-5 | 86 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-7 | 89 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTRKDSLPVD FPKPSDNENS VEVAHPNIKP FSVHPLPLTK NSDVLLESSN GSDSLKEEKN 60 HYYPGKEIKR RKRHRRKQYV DQEPCIMRGV YFKNMKWQAA IKVDKKQIHL GTVGTQEEAA 120 RLYDRAAFMC GREPNFELSE EEKKELQNYT WKDFLDMTRD TITSKKQRKV GLIRRNKTDS 180 LVGQSDGDTE MINGGGSSHS EDGDAETSAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067156 | 0.0 | AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence. | |||
GenBank | CT829643 | 0.0 | CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence. | |||
GenBank | CT841725 | 0.0 | CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626905.1 | 1e-155 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_015626906.1 | 1e-155 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0D3F5F1 | 1e-157 | A0A0D3F5F1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YSK4 | 1e-157 | A0A0D9YSK4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NF71 | 1e-157 | A0A0E0NF71_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM02G17700.1 | 1e-157 | (Oryza glumipatula) | ||||
STRING | ORUFI02G18290.1 | 1e-157 | (Oryza rufipogon) | ||||
STRING | OBART02G17450.1 | 1e-157 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 5e-47 | ERF family protein |