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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G12070.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 424aa MW: 47135.5 Da PI: 7.6247 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 21 | 6.9e-07 | 47 | 70 | 17 | 41 |
TCR 17 YCeCfaagkkCseeCkCedCkNkee 41 YCeCfaa+++C+ C+C+ C Nk e ORUFI02G12070.3 47 YCECFAARVYCDG-CHCSPCGNKIE 70 *************.********976 PP | |||||||
2 | TCR | 50.8 | 3.4e-16 | 116 | 155 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e ORUFI02G12070.3 116 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 155 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 29.074 | 37 | 156 | IPR005172 | CRC domain |
SMART | SM01114 | 0.22 | 47 | 71 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 8.9E-5 | 47 | 68 | IPR005172 | CRC domain |
SMART | SM01114 | 7.6E-18 | 116 | 157 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.1E-12 | 119 | 154 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPYCEC FAARVYCDGC 60 HCSPCGNKIE NENIRKEAIE TILLRNPLAF QPKIENSPNT VTVRKDNSEA IPPIPKHNKG 120 CHCRKSECLK KYCECFQANI LCSKNCRCQD CKNFEGSEER KALVQMKNAS DRNHIQEAAN 180 FALNGATGSL GYKNSPVRRK KYQENSLGEQ ILSEAQFQPT DHADVSQLAS SCTGFGGDIA 240 INYQSKSSEM IYRSPLANTI PLIEVNDLVK NALVACRKAP EAFLTKAGNK VEMQAEKQYQ 300 TNDEINNDKT KEQNLKEASL KDIQNKACID RQNINGTEPH LANSFKDSRP ASPGTQALMC 360 DEMDTTFGNE DYRSPFVVPS RDQDISELNA DQERIVLTGL RDYLRVLITR GNINGECNLL 420 TLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-20 | 47 | 166 | 25 | 133 | Protein lin-54 homolog |
5fd3_B | 5e-20 | 47 | 166 | 25 | 133 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004771 | 0.0 | AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623618.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0E0NCY6 | 0.0 | A0A0E0NCY6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G12070.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 4e-71 | Tesmin/TSO1-like CXC domain-containing protein |