PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI02G03180.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 469aa MW: 50264.9 Da PI: 8.0635 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.2 | 6.4e-40 | 182 | 258 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak yhr+h+vCe hsk+ +v+v+gle+rfCqqCsrfh l efD++krsCrrrL++hn+rrrk+q+ ORUFI02G03180.2 182 CQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQP 258 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.0E-33 | 174 | 243 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.718 | 179 | 256 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.05E-38 | 180 | 261 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.3E-31 | 182 | 255 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MGSFGMDWNQ KSSVLWDWEN MPPIGNSANE NPKNVMLAES KLAGVGVDIG HESGHSSGGT 60 FSSSSEIGYG SSKSSISASI DSPSKVGNTI ELNFASAEEH DKNMDKGKSK VDDTGTSRSP 120 VVAANRVEPL IGLKLGKRTY FEDVCGGQNV KSSPSGVSVA TPSPGLAKKV KVAQQNTQNP 180 HCQVEGCNVD LSSAKPYHRK HRVCEPHSKT LKVIVAGLER RFCQQCSRFH GLAEFDQKKR 240 SCRRRLHDHN ARRRKPQPEA ISLSSSRLST LLYGDARQQA SFLFGQAPYG QMGSCASSWD 300 NPVPGGFKFT ATKAPWSRPT IAAGVDGTHV SNQQASGNVL PHGAHHSFDG LMAFKETNAK 360 VLNQGMEASA VASGSARGPD FEHALSLLSI DSVGAANLQP GSQIHPGVTA IAGTSNPVMM 420 PSPAIWQGGL SLDQQAQFQA FDRLGNDDDE DHLQLPKPSY DNSHYDQMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-27 | 182 | 255 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 254 | KKRSCRRRLHDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242984 | 0.0 | AK242984.1 Oryza sativa Japonica Group cDNA, clone: J090094N03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626878.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X2 | ||||
Swissprot | A2X0Q6 | 0.0 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 0.0 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A0E0N9L2 | 0.0 | A0A0E0N9L2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G03180.3 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-43 | squamosa promoter binding protein-like 2 |