PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G47300.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 412aa    MW: 43951.5 Da    PI: 8.6106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G47300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.75.1e-73623231248
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l++
  ORUFI01G47300.1  62 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRASP--TPAEVAAARRHFLDLCPFLRL 153
                      689************************************************************94444444..6899999************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +  +aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T v++    +ke l +t+  L+k Ae+l+vpf+fn+ v++rl+
  ORUFI01G47300.1 154 AGAAANQSILEAMESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VVSRLD 242
                      ********************************************************....9**************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll....................desvsleserdevLklvkslsPkvvvvveqeadh 248
                      +l++e+Lrvk+gEala++++lqlh ll                    +   +++s+ d++L ++++lsPkv+vv+eqea +
  ORUFI01G47300.1 243 ALDVESLRVKTGEALAICSSLQLHCLLasdddaaavaggdkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVAEQEAGR 323
                      ******************************************9997522233344789********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.99436412IPR005202Transcription factor GRAS
PfamPF035141.8E-7062323IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNARAGAALA RLMVQDEGSS SSVTSSPLHN FSNMPLHPAA AASPTPPWMV RELRSDERGL  60
CLIHLLLNCA AAAAAGRLDA ANAALEHIAS LAAPDGDAMQ RVAAAFAEAL ARRALRAWPG  120
LCRALLLPRA SPTPAEVAAA RRHFLDLCPF LRLAGAAANQ SILEAMESEK IVHVIDLGGA  180
DATQWLELLH LLAARPEGPP HLRLTSVHEH KELLTQTAMA LTKEAERLDV PFQFNPVVSR  240
LDALDVESLR VKTGEALAIC SSLQLHCLLA SDDDAAAVAG GDKERRSPES GLSPSTSRAD  300
AFLGALWGLS PKVMVVAEQE AGRRRATSSS AGKIAPSSPS PHGAAAASTD RRRRRCRRSP  360
PPSRISAKET PPRLDYLLLL LLMNIHVPSS VCVIWLRSRW WMAGAGIDRV TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-35503207252Protein SCARECROW
5b3h_A2e-35463202251Protein SCARECROW
5b3h_D2e-35463202251Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350357RRRRRCRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610776.10.0scarecrow-like protein 3 isoform X2
SwissprotQ9LPR81e-102SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0E0N7L60.0A0A0E0N7L6_ORYRU; Uncharacterized protein
STRINGORUFI01G47300.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-74scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]