PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G44170.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 371aa    MW: 39425.3 Da    PI: 4.9905
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G44170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1511.1e-461573691208
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal..ppsetsekn..sseelaalklfsevsP 89 
                      lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rl    +     a    + + s+       +  al l +e++P
  ORUFI01G44170.1 157 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLPLAHPPALgPASmaFCIPPSSCAgrDGARGEALALAYELCP 250
                      689*************************************************987444332122211222222222345667788889****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      +l+f+h++aN  +lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++g+ L+ +Ae lg+ +ef
  ORUFI01G44170.1 251 YLRFAHFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIGRELEAYAEGLGMYLEF 340
                      ***************************98762222567*************77666*********....9************************ PP

             GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvl 208
                      +  + + le+l++++L v+ +Ea+a+n+vl
  ORUFI01G44170.1 341 RG-INRGLESLHIDDLGVDADEAVAINSVL 369
                      **.799**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.361131371IPR005202Transcription factor GRAS
PfamPF035143.7E-44157369IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGMSPEPCNS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL  60
VSRFSKVTRM DHMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME  120
AMDTPATATF RVGAGDGGGG GGGGAGGGGG GADGMRLVQL LVACAEAVAC RDRAQAAALL  180
RELQAGAPVH GTAFQRVASC FVQGLADRLP LAHPPALGPA SMAFCIPPSS CAGRDGARGE  240
ALALAYELCP YLRFAHFVAN ACMLEAFEGE SNVHVVDLGM TLGLDRGHQW RGLLDGLAAR  300
ASGKPARVRV TGVGARMDTM RAIGRELEAY AEGLGMYLEF RGINRGLESL HIDDLGVDAD  360
EAVAINSVLX A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2516436626218Protein SCARECROW
5b3h_A8e-2516436625217Protein SCARECROW
5b3h_D8e-2516436625217Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.10.0DELLA protein RGL1
TrEMBLA0A0E0N6E40.0A0A0E0N6E4_ORYRU; Uncharacterized protein
STRINGORUFI01G44170.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-22RGA-like 2