PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G44140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 205aa MW: 22647.9 Da PI: 8.123 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161.2 | 8.7e-50 | 55 | 199 | 186 | 333 |
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++l++++L v+ +Ea+a+n+vl+lh++++es + +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr + ORUFI01G44140.1 55 SSSLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYD 145 567899***********************88877777...8***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++ a ORUFI01G44140.1 146 ARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMAA 199 *************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.264 | 1 | 205 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-47 | 55 | 199 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAWHRALCFP PITHSLCSAT QTPAVALGGE PMRPLGIWAA ILTYQGIWAS NEAGSSSLHI 60 DDLGVDADEA VAINSVLELH SVVKESRGAL NSVLQTIRKL SPRAFVLVEQ DAGHNGPFFL 120 GRFMEALHYY AALFDALDAA LPRYDARRAR VEQFHFGAEI RNVVGCEGAA RVERHERADQ 180 WRRRMSRAGF QSVPIKMAAK ARELI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-23 | 58 | 202 | 190 | 335 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. | |||
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814052.1 | 6e-93 | DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 3e-40 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A0E0N6E1 | 1e-149 | A0A0E0N6E1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G44140.1 | 1e-150 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 6e-23 | GRAS family protein |
Publications ? help Back to Top | |||
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