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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G34340.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 76035.6 Da PI: 7.6176 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.6 | 6.7e-25 | 174 | 275 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + ORUFI01G34340.2 174 FCKTLTASDTSTHGGFSVPRRAAEDCfppldhkQLR--PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 263 99**************************99865444..4669************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++v+r+ ORUFI01G34340.2 264 DDGELRLGVRRA 275 89999****997 PP | |||||||
2 | Auxin_resp | 115 | 6.7e-38 | 300 | 380 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF+++YnPra++se+vv+++k++k+++++v++GmRfk++fe+ed++err sG+++gvs++dp+rWp+SkWrsL ORUFI01G34340.2 300 VADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHFESEDVNERR-SGMIAGVSEVDPIRWPGSKWRSL 380 578899****************************************************.9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-47 | 158 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-39 | 169 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.46E-23 | 172 | 274 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-23 | 174 | 275 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-24 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-31 | 301 | 380 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MALPSFYRPP WPSERGGEQR ATDCWAGSPA AGGGRARATA MGIDLNNTAS GGEEDAPAPG 60 PVCRDLWHAC AGPVVSLPRR GSAVVYLPQG HLSAAGAGGG IRGEVAVALP PHVACRVVDV 120 ELCADAATDE VYARLALRAE GEVFERNLHG GGIEREDDME DGDEERKSRM LHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF PPLDHKQLRP SQELVAKDLH GAKWRFRHIY RGQPRRHLLT 240 TGWSSFVNKK KLVSGDAVLF LRGDDGELRL GVRRATQLKN EAIFKAFSSE SSKMRTLSAV 300 ADSLKHGSVF HICYNPRATA SEYVVPYWKF VKSFNHPVCI GMRFKFHFES EDVNERRSGM 360 IAGVSEVDPI RWPGSKWRSL LVRWEDATDC NSQNRVSPWE IEIVGGSISV AHSLSASNGN 420 GRPDSVETEK FPRVLQGQEL MGSRTHRVTC SPQSIDITKS KSFDAWRFLT DTRSCMLGSS 480 TSRLPVQYSG YTHQSVSFGE SIGFPEVLQG QEISQTVPPF QGMLPDACSA KSRYELKNYV 540 CTPATMNGLS SANEGYCLSL STVPPSPPSS LMLYQTGVPQ LELASKNNDK SGNDSQPALR 600 QHKLLSETSW DQFKIGKAST PGNATKPGNG GREVDRTSCR LFGFSLTEKI IPTDKDGEKE 660 VSYETDCQNP RMLDLFGYNC STPGALHALC AAPLGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-100 | 62 | 402 | 19 | 353 | Auxin response factor 1 |
4ldy_B | 1e-100 | 62 | 402 | 19 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072330 | 0.0 | AK072330.1 Oryza sativa Japonica Group cDNA clone:J023039P13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634503.1 | 0.0 | auxin response factor 3 isoform X2 | ||||
Swissprot | Q5JMM1 | 0.0 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | A0A0E0N2J4 | 0.0 | A0A0E0N2J4_ORYRU; Auxin response factor | ||||
STRING | ORUFI01G34340.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-150 | ARF family protein |
Publications ? help Back to Top | |||
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